RNA–Protein interactions for RNA: YDL088C

ASM4, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene ASM4, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASM4	YDL088C	DMC1	P25453	334 aa		4.08	□□□□□ -1.76
ASM4	YDL088C	SRP40	P32583	406 aa	Predicted RBP	4.08	□□□□□ -1.76
ASM4	YDL088C	YAP1802	P53309	568 aa		4.08	□□□□□ -1.76
ASM4	YDL088C	CTK1	Q03957	528 aa	Known RBP	4.08	□□□□□ -1.76
ASM4	YDL088C	APT2	P36973	181 aa		4.07	□□□□□ -1.76
ASM4	YDL088C	RPN10	P38886	268 aa	Known RBP	4.07	□□□□□ -1.76
ASM4	YDL088C	GDH3	P39708	457 aa		4.07	□□□□□ -1.76
ASM4	YDL088C	CHZ1	P40019	153 aa	Predicted RBP	4.07	□□□□□ -1.76
ASM4	YDL088C	TY4A-J	P47023	414 aa		4.07	□□□□□ -1.76
ASM4	YDL088C	TAH11	P47112	604 aa		4.07	□□□□□ -1.76
ASM4	YDL088C	YDR338C	Q05497	695 aa		4.07	□□□□□ -1.76
ASM4	YDL088C	SUT2	Q12286	268 aa		4.07	□□□□□ -1.76
ASM4	YDL088C	MVD1	P32377	396 aa	Known RBP	4.06	□□□□□ -1.76
ASM4	YDL088C	HIR1	P32479	840 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	CCT3	P39077	534 aa	Known RBP	4.06	□□□□□ -1.76
ASM4	YDL088C	ECM1	P39715	212 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	ERR1	P0CX10	437 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	ERR2	P0CX11	437 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	YJL206C	P39529	758 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	YIL166C	P40445	542 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	BAP3	P41815	604 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	NPY1	P53164	384 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	SMX3	P54999	86 aa	Predicted RBP	4.06	□□□□□ -1.76
ASM4	YDL088C	NDJ1	Q12366	352 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	YOL098C	Q12496	1037 aa		4.06	□□□□□ -1.76
ASM4	YDL088C	STO1	P34160	861 aa	Known RBP	4.05	□□□□□ -1.76
ASM4	YDL088C	TRZ1	P36159	838 aa	Predicted RBP	4.05	□□□□□ -1.76
ASM4	YDL088C	SFB3	P38810	929 aa		4.05	□□□□□ -1.76
ASM4	YDL088C	RIX1	P38883	763 aa	Predicted RBP	4.05	□□□□□ -1.76
ASM4	YDL088C	MTL1	P53214	551 aa		4.05	□□□□□ -1.76
ASM4	YDL088C	YKL033W-A	Q86ZR7	236 aa		4.05	□□□□□ -1.76
ASM4	YDL088C	BNR1	P40450	1375 aa		4.05	□□□□□ -1.76
ASM4	YDL088C	TUB1	P09733	447 aa	Known RBP	4.04	□□□□□ -1.76
ASM4	YDL088C	ADE2	P21264	571 aa	Known RBP	4.04	□□□□□ -1.76
ASM4	YDL088C	GSY1	P23337	708 aa		4.04	□□□□□ -1.76
ASM4	YDL088C	YKL091C	P33324	310 aa	Known RBP	4.04	□□□□□ -1.76
ASM4	YDL088C	MTC2	P34246	357 aa		4.04	□□□□□ -1.76
ASM4	YDL088C	YHR112C	P38716	378 aa		4.04	□□□□□ -1.76
ASM4	YDL088C	DSS1	P39112	969 aa		4.04	□□□□□ -1.76
ASM4	YDL088C	NDC80	P40460	691 aa		4.04	□□□□□ -1.76
ASM4	YDL088C	BNA2	P47125	453 aa		4.04	□□□□□ -1.76
ASM4	YDL088C	PAN2	P53010	1115 aa	Predicted RBP	4.04	□□□□□ -1.76
ASM4	YDL088C	PYC1	P11154	1178 aa	Known RBP	4.03	□□□□□ -1.76
ASM4	YDL088C	SPO11	P23179	398 aa		4.03	□□□□□ -1.76
ASM4	YDL088C	APL2	P36000	726 aa	Predicted RBP	4.03	□□□□□ -1.76
ASM4	YDL088C	MCD4	P36051	919 aa		4.03	□□□□□ -1.76
ASM4	YDL088C	FMO1	P38866	432 aa		4.03	□□□□□ -1.76
ASM4	YDL088C	CTR1	P49573	406 aa		4.03	□□□□□ -1.76
ASM4	YDL088C	YLR149C	Q99296	730 aa		4.03	□□□□□ -1.76
ASM4	YDL088C	Q0142	Q9ZZW4	58 aa		4.03	□□□□□ -1.76
ASM4	YDL088C	NUP60	P39705	539 aa		4.02	□□□□□ -1.77
ASM4	YDL088C	ARG2	P40360	574 aa		4.02	□□□□□ -1.77
ASM4	YDL088C	ARG5,6	Q01217	863 aa		4.02	□□□□□ -1.77
ASM4	YDL088C	MCM21	Q06675	368 aa		4.02	□□□□□ -1.77
ASM4	YDL088C	ILV6	P25605	309 aa	Known RBP	4.02	□□□□□ -1.77
ASM4	YDL088C	TIM23	P32897	222 aa		4.02	□□□□□ -1.77
ASM4	YDL088C	GLG1	P36143	616 aa		4.02	□□□□□ -1.77
ASM4	YDL088C	IMO32	P53219	342 aa		4.02	□□□□□ -1.77
ASM4	YDL088C	APM1	Q00776	475 aa	Predicted RBP	4.02	□□□□□ -1.77
ASM4	YDL088C	SNP1	Q00916	300 aa	Predicted RBP	4.02	□□□□□ -1.77
ASM4	YDL088C	CDC9	P04819	755 aa		4.01	□□□□□ -1.77
ASM4	YDL088C	SIR3	P06701	978 aa		4.01	□□□□□ -1.77
ASM4	YDL088C	MIP6	P38760	659 aa	Known RBP	4.01	□□□□□ -1.77
ASM4	YDL088C	COX18	P53239	316 aa		4.01	□□□□□ -1.77
ASM4	YDL088C	RPN7	Q06103	429 aa	Known RBP	4.01	□□□□□ -1.77
ASM4	YDL088C	ADY2	P25613	283 aa		4	□□□□□ -1.77
ASM4	YDL088C	PHO11	P35842	467 aa		4	□□□□□ -1.77
ASM4	YDL088C	HSL7	P38274	827 aa		4	□□□□□ -1.77
ASM4	YDL088C	PHO12	P38693	467 aa		4	□□□□□ -1.77
ASM4	YDL088C	LYS9	P38999	446 aa		4	□□□□□ -1.77
ASM4	YDL088C	CCT7	P42943	550 aa	Known RBP	4	□□□□□ -1.77
ASM4	YDL088C	CAF16	P43569	289 aa		4	□□□□□ -1.77
ASM4	YDL088C	MAL11	P53048	616 aa		4	□□□□□ -1.77
ASM4	YDL088C	ARO10	Q06408	635 aa		4	□□□□□ -1.77
ASM4	YDL088C	TAF3	Q12297	353 aa		4	□□□□□ -1.77
ASM4	YDL088C	VBA3	P25594	458 aa		3.99	□□□□□ -1.77
ASM4	YDL088C	CCR4	P31384	837 aa	Known RBP	3.99	□□□□□ -1.77
ASM4	YDL088C	YKR051W	P36142	418 aa		3.99	□□□□□ -1.77
ASM4	YDL088C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.99	□□□□□ -1.77	not detected
ASM4	YDL088C	ATG4	P53867	494 aa		3.99	□□□□□ -1.77
ASM4	YDL088C	REC102	Q02721	264 aa		3.99	□□□□□ -1.77
ASM4	YDL088C	NHX1	Q04121	633 aa		3.99	□□□□□ -1.77
ASM4	YDL088C	ZRT2	Q12436	422 aa		3.99	□□□□□ -1.77
ASM4	YDL088C	MDM12	Q92328	271 aa		3.99	□□□□□ -1.77
ASM4	YDL088C	HRP1	Q99383	534 aa	Known RBP	3.99	□□□□□ -1.77
ASM4	YDL088C	CIT2	P08679	460 aa		3.98	□□□□□ -1.77
ASM4	YDL088C	ERG6	P25087	383 aa	Known RBP	3.98	□□□□□ -1.77
ASM4	YDL088C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	3.98	□□□□□ -1.77	not detected
ASM4	YDL088C	BDH2	P39713	417 aa		3.98	□□□□□ -1.77
ASM4	YDL088C	DOT6	P40059	670 aa	Known RBP	3.98	□□□□□ -1.77
ASM4	YDL088C	RPN4	Q03465	531 aa		3.98	□□□□□ -1.77
ASM4	YDL088C	YLR125W	Q12138	136 aa		3.98	□□□□□ -1.77
ASM4	YDL088C	RNR1	P21524	888 aa	Known RBP	3.97	□□□□□ -1.77
ASM4	YDL088C	FLO10	P36170	1169 aa		3.97	□□□□□ -1.77
ASM4	YDL088C	CRP1	P38845	465 aa	Known RBP	3.97	□□□□□ -1.77
ASM4	YDL088C	NUP82	P40368	713 aa		3.97	□□□□□ -1.77
ASM4	YDL088C	DIA2	Q08496	732 aa	Predicted RBP	3.97	□□□□□ -1.77
ASM4	YDL088C	USV1	Q12132	391 aa		3.97	□□□□□ -1.77
ASM4	YDL088C	CLF1	Q12309	687 aa	Predicted RBP	3.97	□□□□□ -1.77
ASM4	YDL088C	YNL162W-A	Q3E7A8	72 aa		3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 52.4 ms