RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	MKK2	P32491	506 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	PEP7	P32609	515 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	TIM23	P32897	222 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	TRM2	P33753	639 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	FUI1	P38196	639 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	YHR020W	P38708	688 aa	Known RBP	2.63	□□□□□ -1.99
CLN3	YAL040C	VID28	P40547	921 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	EAF6	P47128	113 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	RPT4	P53549	437 aa	Known RBP	2.63	□□□□□ -1.99
CLN3	YAL040C	IRC4	Q03036	179 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	PLB2	Q03674	706 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	GIR2	Q03768	265 aa	Predicted RBP	2.63	□□□□□ -1.99
CLN3	YAL040C	ACK1	Q07622	623 aa	Predicted RBP	2.63	□□□□□ -1.99
CLN3	YAL040C	GPB1	Q08886	897 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	RRI2	Q12348	645 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	VPS13	Q07878	3144 aa		2.63	□□□□□ -1.99
CLN3	YAL040C	FLO11	P08640	1367 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	CHO2	P05374	869 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	CDC34	P14682	295 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	SYP1	P25623	870 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	CDC20	P26309	610 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	MFT1	P33441	392 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	CRP1	P38845	465 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	ERP2	P39704	215 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	CNN1	P43618	361 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	MNN10	P50108	393 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	CWC24	P53769	259 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	HDA1	P53973	706 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	GDE1	Q02979	1223 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	SYF1	Q04048	859 aa	Predicted RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	VMS1	Q04311	632 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	INM2	Q05533	292 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	MRL1	Q06815	381 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	SVS1	Q12254	260 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	NOP14	Q99207	810 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	RNR2	P09938	399 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	DBP5	P20449	482 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	SRM1	P21827	482 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	MBR1	P23493	339 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	LCB1	P25045	558 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	HCM1	P25364	564 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	APL1	P27351	700 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	NOC2	P39744	710 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	SNF7	P39929	240 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	SPF1	P39986	1215 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	KRI1	P42846	591 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	YGR053C	P53234	283 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	ESF2	P53743	316 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	KIN4	Q01919	800 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	SVL3	Q03088	825 aa	Known RBP	2.62	□□□□□ -1.99
CLN3	YAL040C	SIZ1	Q04195	904 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	IRC3	Q06683	689 aa		2.62	□□□□□ -1.99
CLN3	YAL040C	MYO1	P08964	1928 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	SUP35	P05453	685 aa	Known RBP	2.61	□□□□□ -1.99
CLN3	YAL040C	YER152C	P10356	443 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	RPA135	P22138	1203 aa	Known RBP	2.61	□□□□□ -1.99
CLN3	YAL040C	ROX1	P25042	368 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	RAD27	P26793	382 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	KRE2	P27809	442 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	MLS1	P30952	554 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	IMP2'	P32351	346 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	TOA1	P32773	286 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	GSM1	P42950	618 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	TIM54	P47045	478 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	FAA4	P47912	694 aa	Known RBP	2.61	□□□□□ -1.99
CLN3	YAL040C	GNP1	P48813	663 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	CTF18	P49956	741 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	MCM6	P53091	1017 aa	Known RBP	2.61	□□□□□ -1.99
CLN3	YAL040C	PEX8	P53248	589 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	2.61	□□□□□ -1.99	not detected
CLN3	YAL040C	COG4	Q06096	861 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	TMA10	Q06177	86 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	TDA5	Q06417	326 aa	Known RBP	2.61	□□□□□ -1.99
CLN3	YAL040C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	2.61	□□□□□ -1.99	not detected
CLN3	YAL040C	PUS9	Q12069	462 aa		2.61	□□□□□ -1.99
CLN3	YAL040C	ATP4	P05626	244 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	COQ1	P18900	473 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	BAS1	P22035	811 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	TRX2	P22803	104 aa	Known RBP	2.6	□□□□□ -1.99
CLN3	YAL040C	ICL1	P28240	557 aa	Predicted RBP	2.6	□□□□□ -1.99
CLN3	YAL040C	MSP1	P28737	362 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	THI4	P32318	326 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	DUT1	P33317	147 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	MPE1	P35728	441 aa	Known RBP	2.6	□□□□□ -1.99
CLN3	YAL040C	PTK1	P36002	662 aa	Predicted RBP	2.6	□□□□□ -1.99
CLN3	YAL040C	UGA2	P38067	497 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	ERT1	P38140	529 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	PFF1	P38244	976 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	YFL054C	P43549	646 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	EPL1	P43572	832 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	MSE1	P48525	536 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	TYW3	P53177	273 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	VPS62	P53285	467 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	FOL1	P53848	824 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	HXT15	P54854	567 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	DIB1	Q06819	143 aa	Predicted RBP	2.6	□□□□□ -1.99
CLN3	YAL040C	OPI10	Q08202	246 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	YOR378W	Q08902	515 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	FLC1	Q08967	793 aa		2.6	□□□□□ -1.99
CLN3	YAL040C	RIB2	Q12362	591 aa	Known RBP	2.6	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 101.5 ms