RNA–Protein interactions for RNA: YNR007C

ATG3, Transcript of E2-like enzyme, yeast

Gene ATG3, Length 933 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG3	YNR007C	SIT1	P39980	628 aa		4.28	□□□□□ -1.72
ATG3	YNR007C	TPO2	P53283	614 aa		4.28	□□□□□ -1.72
ATG3	YNR007C	RNT1	Q02555	471 aa		4.28	□□□□□ -1.72
ATG3	YNR007C	OMS1	Q06668	471 aa		4.28	□□□□□ -1.72
ATG3	YNR007C	FBP1	P09201	348 aa		4.27	□□□□□ -1.73
ATG3	YNR007C	YRO2	P38079	344 aa		4.27	□□□□□ -1.73
ATG3	YNR007C	IRR1	P40541	1150 aa		4.27	□□□□□ -1.73
ATG3	YNR007C	SLU7	Q02775	382 aa	Known RBP	4.27	□□□□□ -1.73
ATG3	YNR007C	SSL1	Q04673	461 aa	Predicted RBP	4.27	□□□□□ -1.73
ATG3	YNR007C	MCH5	Q08777	521 aa		4.27	□□□□□ -1.73
ATG3	YNR007C	NUP157	P40064	1391 aa	Known RBP	4.27	□□□□□ -1.73
ATG3	YNR007C	CCM1	P48237	864 aa	Predicted RBP	4.26	□□□□□ -1.73
ATG3	YNR007C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	RIP-Chip
ATG3	YNR007C	ACF2	Q12168	779 aa		4.26	□□□□□ -1.73
ATG3	YNR007C	CAT8	P39113	1433 aa		4.26	□□□□□ -1.73
ATG3	YNR007C	GDB1	Q06625	1536 aa		4.26	□□□□□ -1.73
ATG3	YNR007C	SCT1	P32784	759 aa		4.25	□□□□□ -1.73
ATG3	YNR007C	PAM1	P37304	830 aa	Known RBP	4.25	□□□□□ -1.73
ATG3	YNR007C	SDP1	P40479	209 aa		4.25	□□□□□ -1.73
ATG3	YNR007C	STB4	P50104	949 aa		4.25	□□□□□ -1.73
ATG3	YNR007C	ERG5	P54781	538 aa		4.25	□□□□□ -1.73
ATG3	YNR007C	TIM44	Q01852	431 aa		4.25	□□□□□ -1.73
ATG3	YNR007C	YML122C	Q03207	126 aa		4.25	□□□□□ -1.73
ATG3	YNR007C	TMN2	Q04562	672 aa		4.25	□□□□□ -1.73
ATG3	YNR007C	PEX19	Q07418	342 aa		4.25	□□□□□ -1.73
ATG3	YNR007C	PPR1	P07272	904 aa	Predicted RBP	4.24	□□□□□ -1.73
ATG3	YNR007C	ALG7	P07286	448 aa		4.24	□□□□□ -1.73
ATG3	YNR007C	PRP9	P19736	530 aa	Known RBP	4.24	□□□□□ -1.73
ATG3	YNR007C	RFA1	P22336	621 aa	Known RBP	4.24	□□□□□ -1.73
ATG3	YNR007C	SEC21	P32074	935 aa	Known RBP	4.24	□□□□□ -1.73
ATG3	YNR007C	VAC8	P39968	578 aa		4.24	□□□□□ -1.73
ATG3	YNR007C	STU2	P46675	888 aa		4.24	□□□□□ -1.73
ATG3	YNR007C	CTF13	P35203	478 aa		4.23	□□□□□ -1.73
ATG3	YNR007C	SPF1	P39986	1215 aa	Known RBP	4.23	□□□□□ -1.73
ATG3	YNR007C	YIL108W	P40483	696 aa	Known RBP	4.23	□□□□□ -1.73
ATG3	YNR007C	QRI1	P43123	477 aa	Known RBP	4.23	□□□□□ -1.73
ATG3	YNR007C	BUL2	Q03758	920 aa	Known RBP	4.23	□□□□□ -1.73
ATG3	YNR007C	LCD1	Q04377	747 aa		4.23	□□□□□ -1.73
ATG3	YNR007C	RPD3	P32561	433 aa		4.22	□□□□□ -1.73
ATG3	YNR007C	HBS1	P32769	611 aa	Known RBP	4.22	□□□□□ -1.73
ATG3	YNR007C	STE5	P32917	917 aa		4.22	□□□□□ -1.73
ATG3	YNR007C	TYE7	P33122	291 aa	Predicted RBP	4.22	□□□□□ -1.73
ATG3	YNR007C	YAP3	P38749	330 aa		4.22	□□□□□ -1.73
ATG3	YNR007C	CTF8	P38877	133 aa		4.22	□□□□□ -1.73
ATG3	YNR007C	ALD6	P54115	500 aa	Known RBP	4.22	□□□□□ -1.73
ATG3	YNR007C	YMR206W	Q03695	313 aa		4.22	□□□□□ -1.73
ATG3	YNR007C	TDA5	Q06417	326 aa	Known RBP	4.22	□□□□□ -1.73
ATG3	YNR007C	SWM1	Q12379	170 aa		4.22	□□□□□ -1.73
ATG3	YNR007C	TRM13	Q12383	476 aa		4.22	□□□□□ -1.73
ATG3	YNR007C	TRM11	Q12463	433 aa		4.22	□□□□□ -1.73
ATG3	YNR007C	REC104	P33323	182 aa		4.21	□□□□□ -1.74
ATG3	YNR007C	YBR184W	P38299	523 aa		4.21	□□□□□ -1.74
ATG3	YNR007C	TOK1	P40310	691 aa		4.21	□□□□□ -1.74
ATG3	YNR007C	CEP3	P40969	608 aa		4.21	□□□□□ -1.74
ATG3	YNR007C	HDA1	P53973	706 aa		4.21	□□□□□ -1.74
ATG3	YNR007C	YKR011C	Q02209	353 aa		4.21	□□□□□ -1.74
ATG3	YNR007C	IRC10	Q08118	586 aa		4.21	□□□□□ -1.74
ATG3	YNR007C	DNF3	Q12674	1656 aa		4.21	□□□□□ -1.74
ATG3	YNR007C	VPS13	Q07878	3144 aa		4.2	□□□□□ -1.74
ATG3	YNR007C	MET3	P08536	511 aa		4.2	□□□□□ -1.74
ATG3	YNR007C	TUB3	P09734	445 aa	Known RBP	4.2	□□□□□ -1.74
ATG3	YNR007C	CDC11	P32458	415 aa		4.2	□□□□□ -1.74
ATG3	YNR007C	ERT1	P38140	529 aa		4.2	□□□□□ -1.74
ATG3	YNR007C	DLT1	Q04216	342 aa		4.2	□□□□□ -1.74
ATG3	YNR007C	FRE5	Q08908	694 aa		4.2	□□□□□ -1.74
ATG3	YNR007C	BNR1	P40450	1375 aa		4.19	□□□□□ -1.74
ATG3	YNR007C	URA1	P28272	314 aa	Predicted RBP	4.19	□□□□□ -1.74
ATG3	YNR007C	PFD1	P46988	109 aa		4.19	□□□□□ -1.74
ATG3	YNR007C	MUK1	Q02866	612 aa		4.19	□□□□□ -1.74
ATG3	YNR007C	RPS9A	O13516	197 aa	Known RBP	4.18	□□□□□ -1.74
ATG3	YNR007C	MTH1	P35198	433 aa		4.18	□□□□□ -1.74
ATG3	YNR007C	YHR078W	P38799	552 aa		4.18	□□□□□ -1.74
ATG3	YNR007C	ELO3	P40319	345 aa		4.18	□□□□□ -1.74
ATG3	YNR007C	ALR2	P43553	858 aa		4.18	□□□□□ -1.74
ATG3	YNR007C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
ATG3	YNR007C	UTP8	P53276	713 aa	Known RBP	4.18	□□□□□ -1.74
ATG3	YNR007C	YPR071W	Q12346	211 aa		4.18	□□□□□ -1.74
ATG3	YNR007C	ARO1	P08566	1588 aa	Known RBP	4.18	□□□□□ -1.74
ATG3	YNR007C	SEC7	P11075	2009 aa	Known RBP	4.17	□□□□□ -1.74
ATG3	YNR007C	CHC1	P22137	1653 aa	Known RBP	4.17	□□□□□ -1.74
ATG3	YNR007C	CAF20	P12962	161 aa	Known RBP	4.17	□□□□□ -1.74
ATG3	YNR007C	RPP1	P38786	293 aa		4.17	□□□□□ -1.74
ATG3	YNR007C	DAS1	P47005	663 aa		4.17	□□□□□ -1.74
ATG3	YNR007C	GND2	P53319	492 aa		4.17	□□□□□ -1.74
ATG3	YNR007C	HBT1	Q07653	1046 aa	Known RBP	4.17	□□□□□ -1.74
ATG3	YNR007C	FMP25	Q08023	583 aa		4.17	□□□□□ -1.74
ATG3	YNR007C	GEA1	P47102	1408 aa	Predicted RBP	4.17	□□□□□ -1.74
ATG3	YNR007C	YPR117W	Q06116	2489 aa		4.17	□□□□□ -1.74
ATG3	YNR007C	MPH2	P0CD99	609 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	SPC42	P36094	363 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	PET10	P36139	283 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	PPS1	P38148	807 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	YBR284W	P38150	797 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	YHL017W	P38745	532 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	PUS2	P53167	370 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	MAK10	Q02197	733 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	ADY4	Q05955	493 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	SPO75	Q07798	868 aa		4.16	□□□□□ -1.74
ATG3	YNR007C	ATF1	P40353	525 aa		4.15	□□□□□ -1.75
ATG3	YNR007C	SDS3	P40505	327 aa		4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 696.4 ms