RNA–Protein interactions for RNA: YNL330C

RPD3, Transcript of Histone deacetylase, component of both the Rpd3S and Rpd3L complexes, yeastyeast

Gene RPD3, Length 1,302 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPD3YNL330C PHO88P38264 188 aaPredicted RBP9.17□□□□□ -0.94
RPD3YNL330C ZPR1P53303 486 aaKnown RBP9.17□□□□□ -0.94
RPD3YNL330C ADA2Q02336 434 aa9.17□□□□□ -0.94
RPD3YNL330C ATG16Q03818 150 aa9.17□□□□□ -0.94
RPD3YNL330C PNP1Q05788 311 aa9.17□□□□□ -0.94
RPD3YNL330C YDL206WQ12424 762 aa9.17□□□□□ -0.94
RPD3YNL330C RAD18P10862 487 aa9.16□□□□□ -0.94
RPD3YNL330C KRS1P15180 591 aaKnown RBP9.16□□□□□ -0.94
RPD3YNL330C DBF4P32325 704 aa9.16□□□□□ -0.94
RPD3YNL330C PDB1P32473 366 aaKnown RBP9.16□□□□□ -0.94
RPD3YNL330C SWE1P32944 819 aa9.16□□□□□ -0.94
RPD3YNL330C VHR2P40041 505 aa9.16□□□□□ -0.94
RPD3YNL330C YTA12P40341 825 aa9.16□□□□□ -0.94
RPD3YNL330C YMR1P47147 688 aaKnown RBP RIP-Chip data9.16□□□□□ -0.94not detected
RPD3YNL330C SUB2Q07478 446 aaKnown RBP9.16□□□□□ -0.94
RPD3YNL330C PHR1P05066 565 aaKnown RBP RIP-Chip data9.15□□□□□ -0.94not detected
RPD3YNL330C SPT2P06843 333 aaPredicted RBP9.15□□□□□ -0.94
RPD3YNL330C ARG1P22768 420 aa9.15□□□□□ -0.94
RPD3YNL330C GCD6P32501 712 aaKnown RBP9.15□□□□□ -0.94
RPD3YNL330C ATG19P35193 415 aa9.15□□□□□ -0.94
RPD3YNL330C END3P39013 349 aa9.15□□□□□ -0.94
RPD3YNL330C VPS70P47161 811 aa9.15□□□□□ -0.94
RPD3YNL330C HUL5P53119 910 aa9.15□□□□□ -0.94
RPD3YNL330C YGR111WP53265 400 aa9.15□□□□□ -0.94
RPD3YNL330C TRM44Q02648 567 aaKnown RBP9.15□□□□□ -0.94
RPD3YNL330C SHR3Q02774 210 aa9.15□□□□□ -0.94
RPD3YNL330C FAR8Q05040 523 aa9.15□□□□□ -0.94
RPD3YNL330C GUD1Q07729 489 aa9.15□□□□□ -0.94
RPD3YNL330C TY1B-AO13527 1196 aaKnown RBP9.14□□□□□ -0.95
RPD3YNL330C SRV2P17555 526 aaKnown RBP9.14□□□□□ -0.95
RPD3YNL330C GAL11P19659 1081 aa9.14□□□□□ -0.95
RPD3YNL330C NIP1P32497 812 aaKnown RBP9.14□□□□□ -0.95
RPD3YNL330C MUD1P32605 298 aaKnown RBP9.14□□□□□ -0.95
RPD3YNL330C YBL055CP34220 418 aaPredicted RBP9.14□□□□□ -0.95
RPD3YNL330C SWH1P35845 1188 aa9.14□□□□□ -0.95
RPD3YNL330C HEK2P38199 381 aaKnown RBP RIP-Chip data9.14□□□□□ -0.95not detected
RPD3YNL330C NCL1P38205 684 aaKnown RBP9.14□□□□□ -0.95
RPD3YNL330C NIT1P40447 199 aa9.14□□□□□ -0.95
RPD3YNL330C SPC24Q04477 213 aa9.14□□□□□ -0.95
RPD3YNL330C ERV41Q04651 352 aa9.14□□□□□ -0.95
RPD3YNL330C YLR326WQ06170 240 aaKnown RBP9.14□□□□□ -0.95
RPD3YNL330C CRD1Q07560 283 aa9.14□□□□□ -0.95
RPD3YNL330C CMS1Q07897 291 aaKnown RBP9.14□□□□□ -0.95
RPD3YNL330C NOB1Q08444 459 aaKnown RBP9.14□□□□□ -0.95
RPD3YNL330C RRN6P32786 894 aa9.13□□□□□ -0.95
RPD3YNL330C RAD5P32849 1169 aaPredicted RBP9.13□□□□□ -0.95
RPD3YNL330C HEL1P36113 551 aa9.13□□□□□ -0.95
RPD3YNL330C STV1P37296 890 aa9.13□□□□□ -0.95
RPD3YNL330C ACA1P39970 489 aa9.13□□□□□ -0.95
RPD3YNL330C TDA10P42938 290 aa9.13□□□□□ -0.95
RPD3YNL330C ATG36P46983 293 aa9.13□□□□□ -0.95
RPD3YNL330C CLA4P48562 842 aa9.13□□□□□ -0.95
RPD3YNL330C VPS16Q03308 798 aa9.13□□□□□ -0.95
RPD3YNL330C TAF9Q05027 157 aa9.13□□□□□ -0.95
RPD3YNL330C SLX4Q12098 748 aa9.13□□□□□ -0.95
RPD3YNL330C KAR3P17119 729 aa9.12□□□□□ -0.95
RPD3YNL330C CAP1P28495 268 aaKnown RBP9.12□□□□□ -0.95
RPD3YNL330C YKR018CP36114 725 aa9.12□□□□□ -0.95
RPD3YNL330C PBP2P38151 413 aaKnown RBP RIP-Chip data9.12□□□□□ -0.95not detected
RPD3YNL330C VHC1P38329 1120 aa9.12□□□□□ -0.95
RPD3YNL330C MSG5P38590 489 aa9.12□□□□□ -0.95
RPD3YNL330C RIO2P40160 425 aaKnown RBP9.12□□□□□ -0.95
RPD3YNL330C ILM1P47155 203 aa9.12□□□□□ -0.95
RPD3YNL330C SUB1P54000 292 aaKnown RBP9.12□□□□□ -0.95
RPD3YNL330C VPS72Q03388 795 aa9.12□□□□□ -0.95
RPD3YNL330C TMA64Q04600 565 aaKnown RBP9.12□□□□□ -0.95
RPD3YNL330C PMS1P14242 873 aa9.11□□□□□ -0.95
RPD3YNL330C VMA1P17255 1071 aaKnown RBP9.11□□□□□ -0.95
RPD3YNL330C TGL1P34163 548 aa9.11□□□□□ -0.95
RPD3YNL330C PMC1P38929 1173 aaPredicted RBP9.11□□□□□ -0.95
RPD3YNL330C TAM41P53230 385 aa9.11□□□□□ -0.95
RPD3YNL330C GTR1Q00582 310 aa9.11□□□□□ -0.95
RPD3YNL330C PTA1Q01329 785 aaPredicted RBP9.11□□□□□ -0.95
RPD3YNL330C YML037CQ03703 340 aa9.11□□□□□ -0.95
RPD3YNL330C YDR222WQ04925 415 aa9.11□□□□□ -0.95
RPD3YNL330C SVF1Q05515 481 aa9.11□□□□□ -0.95
RPD3YNL330C SPH1Q06160 661 aa9.11□□□□□ -0.95
RPD3YNL330C ACM1Q08981 209 aa9.11□□□□□ -0.95
RPD3YNL330C CDC53Q12018 815 aaKnown RBP9.11□□□□□ -0.95
RPD3YNL330C RPS3P05750 240 aaKnown RBP9.1□□□□□ -0.95
RPD3YNL330C CBP1P07252 654 aa9.1□□□□□ -0.95
RPD3YNL330C YML002WP0CF17 737 aa9.1□□□□□ -0.95
RPD3YNL330C PRP4P20053 465 aaKnown RBP9.1□□□□□ -0.95
RPD3YNL330C SFL1P20134 766 aa9.1□□□□□ -0.95
RPD3YNL330C MRPL25P23369 157 aa9.1□□□□□ -0.95
RPD3YNL330C SSD1P24276 1250 aaKnown RBP RIP-Chip data9.1□□□□□ -0.95not detected
RPD3YNL330C COT1P32798 439 aa9.1□□□□□ -0.95
RPD3YNL330C PIN4P34217 668 aaKnown RBP RIP-Chip data9.1□□□□□ -0.95not detected
RPD3YNL330C CCL1P37366 393 aa9.1□□□□□ -0.95
RPD3YNL330C YBR062CP38239 180 aa9.1□□□□□ -0.95
RPD3YNL330C YMR134WP40207 237 aa9.1□□□□□ -0.95
RPD3YNL330C MDR1P53258 950 aa9.1□□□□□ -0.95
RPD3YNL330C RPA49Q01080 415 aaPredicted RBP9.1□□□□□ -0.95
RPD3YNL330C YDR278CQ05612 105 aa9.1□□□□□ -0.95
RPD3YNL330C GCR1P07261 785 aa9.09□□□□□ -0.95
RPD3YNL330C GAL2P13181 574 aa9.09□□□□□ -0.95
RPD3YNL330C HPR1P17629 752 aaKnown RBP9.09□□□□□ -0.95
RPD3YNL330C DAL2P25335 343 aa9.09□□□□□ -0.95
RPD3YNL330C PUF4P25339 888 aaKnown RBP RIP-Chip data9.09□□□□□ -0.95 RIP-Chip
RPD3YNL330C KIP2P28743 706 aa9.09□□□□□ -0.95
Retrieved 100 of 5,963 RNA–protein pairs in 22.3 ms