RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT8	YLR055C	TAF9	Q05027	157 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	TSR1	Q07381	788 aa	Known RBP	11.79	□□□□□ -0.52
SPT8	YLR055C	CMS1	Q07897	291 aa	Known RBP	11.79	□□□□□ -0.52
SPT8	YLR055C	PGK1	P00560	416 aa	Known RBP	11.79	□□□□□ -0.52
SPT8	YLR055C	SEC14	P24280	304 aa	Known RBP	11.79	□□□□□ -0.52
SPT8	YLR055C	NMD5	P46970	1048 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	SCS3	P53012	380 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	GUP1	P53154	560 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	SEC5	P89102	971 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	ULP1	Q02724	621 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	PHM6	Q05637	104 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	LCB5	Q06147	687 aa	Known RBP	11.79	□□□□□ -0.52
SPT8	YLR055C	TCO89	Q08921	799 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	AIM41	Q12032	185 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	TY4A-H	Q6Q5P6	413 aa		11.79	□□□□□ -0.52
SPT8	YLR055C	KTR2	P33550	425 aa		11.78	□□□□□ -0.52
SPT8	YLR055C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	11.78	□□□□□ -0.52	RIP-Chip
SPT8	YLR055C	DIP5	P53388	608 aa		11.78	□□□□□ -0.52
SPT8	YLR055C	PNP1	Q05788	311 aa		11.78	□□□□□ -0.52
SPT8	YLR055C	YLR177W	Q06251	628 aa		11.78	□□□□□ -0.52
SPT8	YLR055C	CRD1	Q07560	283 aa		11.78	□□□□□ -0.52
SPT8	YLR055C	FRA1	Q07825	749 aa		11.78	□□□□□ -0.52
SPT8	YLR055C	SPO21	Q12411	609 aa		11.78	□□□□□ -0.52
SPT8	YLR055C	PAH1	P32567	862 aa		11.77	□□□□□ -0.52
SPT8	YLR055C	GPD2	P41911	440 aa	Known RBP	11.77	□□□□□ -0.52
SPT8	YLR055C	BRE2	P43132	505 aa		11.77	□□□□□ -0.52
SPT8	YLR055C	YML119W	Q03208	357 aa		11.77	□□□□□ -0.52
SPT8	YLR055C	NCA2	Q12374	616 aa		11.77	□□□□□ -0.52
SPT8	YLR055C	YOR131C	Q12486	218 aa		11.77	□□□□□ -0.52
SPT8	YLR055C	SEY1	Q99287	776 aa		11.77	□□□□□ -0.52
SPT8	YLR055C	TRP2	P00899	507 aa	Known RBP	11.76	□□□□□ -0.53
SPT8	YLR055C	SUP45	P12385	437 aa	Known RBP	11.76	□□□□□ -0.53
SPT8	YLR055C	POX1	P13711	748 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	PRP4	P20053	465 aa	Known RBP	11.76	□□□□□ -0.53
SPT8	YLR055C	TRK2	P28584	889 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	YBR062C	P38239	180 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	YJR107W	P47145	328 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	RIM8	P53179	542 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	CPR6	P53691	371 aa	Known RBP	11.76	□□□□□ -0.53
SPT8	YLR055C	PGA2	P53903	129 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	GTR1	Q00582	310 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	YPL109C	Q02981	657 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	NOB1	Q08444	459 aa	Known RBP	11.76	□□□□□ -0.53
SPT8	YLR055C	ADH4	P10127	382 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	CLN3	P13365	580 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	HMF1	P40037	129 aa	Known RBP	11.76	□□□□□ -0.53
SPT8	YLR055C	SDS3	P40505	327 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	HXT8	P40886	569 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	RPS7B	P48164	190 aa	Known RBP	11.76	□□□□□ -0.53
SPT8	YLR055C	NBP1	P52919	319 aa	Predicted RBP	11.76	□□□□□ -0.53
SPT8	YLR055C	SPC24	Q04477	213 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	SUT2	Q12286	268 aa		11.76	□□□□□ -0.53
SPT8	YLR055C	RAD3	P06839	778 aa		11.75	□□□□□ -0.53
SPT8	YLR055C	DBP1	P24784	617 aa	Known RBP	11.75	□□□□□ -0.53
SPT8	YLR055C	NAM7	P30771	971 aa	Known RBP	11.75	□□□□□ -0.53
SPT8	YLR055C	SUV3	P32580	737 aa		11.75	□□□□□ -0.53
SPT8	YLR055C	TVP38	P36164	337 aa		11.75	□□□□□ -0.53
SPT8	YLR055C	ATG36	P46983	293 aa		11.75	□□□□□ -0.53
SPT8	YLR055C	TFB2	Q02939	513 aa		11.75	□□□□□ -0.53
SPT8	YLR055C	YMR018W	Q04364	514 aa		11.75	□□□□□ -0.53
SPT8	YLR055C	YLL058W	Q12198	575 aa		11.75	□□□□□ -0.53
SPT8	YLR055C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	11.74	□□□□□ -0.53	not detected
SPT8	YLR055C	POL3	P15436	1097 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	YME1	P32795	747 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	TIM23	P32897	222 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	BLI1	P35727	113 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	LCP5	P40079	357 aa	Predicted RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	SEC26	P41810	973 aa	Known RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	ROG3	P43602	733 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	PRY3	P47033	881 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	TMA22	P47089	198 aa	Predicted RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	SYH1	Q02875	849 aa	Known RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	YMR187C	Q03236	431 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	GIR2	Q03768	265 aa	Predicted RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	MAG2	Q06436	670 aa	Known RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	YDL057W	Q07379	328 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	SRV2	P17555	526 aa	Known RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	SPT5	P27692	1063 aa	Known RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	NIP1	P32497	812 aa	Known RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	BCS1	P32839	456 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	DEF1	P35732	738 aa	Known RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	PIH1	P38768	344 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	VPS62	P53285	467 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	JJJ1	P53863	590 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	SUB1	P54000	292 aa	Known RBP	11.74	□□□□□ -0.53
SPT8	YLR055C	VPS16	Q03308	798 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	FAR8	Q05040	523 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	MED1	Q12321	566 aa		11.74	□□□□□ -0.53
SPT8	YLR055C	PFK1	P16861	987 aa	Known RBP	11.73	□□□□□ -0.53
SPT8	YLR055C	CDC48	P25694	835 aa	Known RBP	11.73	□□□□□ -0.53
SPT8	YLR055C	BCH2	P36122	765 aa		11.73	□□□□□ -0.53
SPT8	YLR055C	ECM2	P38241	364 aa	Known RBP	11.73	□□□□□ -0.53
SPT8	YLR055C	KAP123	P40069	1113 aa	Known RBP	11.73	□□□□□ -0.53
SPT8	YLR055C	UTP6	Q02354	440 aa	Known RBP	11.73	□□□□□ -0.53
SPT8	YLR055C	TDA9	Q04545	1251 aa		11.73	□□□□□ -0.53
SPT8	YLR055C	FAL1	Q12099	399 aa	Known RBP	11.73	□□□□□ -0.53
SPT8	YLR055C	YLR462W	O13556	202 aa		11.72	□□□□□ -0.53
SPT8	YLR055C	SRD1	P09007	221 aa		11.72	□□□□□ -0.53
SPT8	YLR055C	YKL050C	P35736	922 aa		11.72	□□□□□ -0.53
SPT8	YLR055C	YKL023W	P36103	277 aa	Known RBP	11.72	□□□□□ -0.53

Retrieved 100 of 5,963 RNA–protein pairs in 111.2 ms