RNA–Protein interactions for RNA: YJR001W

AVT1, Transcript of Vacuolar transporter, yeast

Gene AVT1, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AVT1	YJR001W	PRP9	P19736	530 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	PCL2	P25693	308 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	HEM12	P32347	362 aa	Predicted RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	TIF3	P34167	436 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	DCW1	P36091	449 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	SRP72	P38688	640 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	APM2	P38700	605 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	OAF1	P39720	1047 aa	Predicted RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	NOP16	P40007	231 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	TPA1	P40032	644 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	FTR1	P40088	404 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	LAM5	P43560	674 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	ROG3	P43602	733 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	IRC6	P43615	237 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	EFM5	P53200	248 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	ZDS2	P54786	942 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	RSM28	Q03430	361 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	YKU80	Q04437	629 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	ADY3	Q07732	790 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	YTM1	Q12024	460 aa	Predicted RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	HBN1	Q96VH4	193 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	TOP3	P13099	656 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	PFK1	P16861	987 aa	Known RBP	4.78	□□□□□ -1.64
AVT1	YJR001W	PHO81	P17442	1178 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	PGS1	P25578	521 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	CMK1	P27466	446 aa	Known RBP	4.78	□□□□□ -1.64
AVT1	YJR001W	DAL3	P32459	195 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	NPL6	P32832	435 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	MUD2	P36084	527 aa	Known RBP	4.78	□□□□□ -1.64
AVT1	YJR001W	PSY4	P38193	441 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	PEX18	P38855	283 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	RIC1	P40395	1056 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	XKS1	P42826	600 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	SHE10	P53075	577 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	RTC4	P53850	401 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	MRPL19	P53875	158 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
AVT1	YJR001W	MSH6	Q03834	1242 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	SLK19	Q08581	821 aa	Known RBP	4.78	□□□□□ -1.64
AVT1	YJR001W	YIL002W-A	Q3E7Z5	69 aa		4.78	□□□□□ -1.64
AVT1	YJR001W	VMR1	P38735	1592 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	PET494	P07390	489 aa	Predicted RBP	4.77	□□□□□ -1.65
AVT1	YJR001W	MET8	P15807	274 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	GSY1	P23337	708 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	STE11	P23561	717 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	RPC53	P25441	422 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	SWC3	P31376	625 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	PUP2	P32379	260 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	PRP19	P32523	503 aa	Known RBP	4.77	□□□□□ -1.65
AVT1	YJR001W	RER2	P35196	286 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	CCL1	P37366	393 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	UBP13	P38187	747 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	TIF5	P38431	405 aa	Known RBP	4.77	□□□□□ -1.65
AVT1	YJR001W	PET100	P38958	111 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	XDJ1	P39102	459 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	HXT13	P39924	564 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	IAH1	P41734	238 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	MSN5	P52918	1224 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	HXT17	P53631	564 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	EAF7	P53911	425 aa	Known RBP	4.77	□□□□□ -1.65
AVT1	YJR001W	HXT15	P54854	567 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	VPS20	Q04272	221 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	RRN11	Q04712	507 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	SSQ1	Q05931	657 aa	Predicted RBP	4.77	□□□□□ -1.65
AVT1	YJR001W	ENT1	Q12518	454 aa		4.77	□□□□□ -1.65
AVT1	YJR001W	SRD1	P09007	221 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	ILS1	P09436	1072 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	GFA1	P14742	717 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	AAC3	P18238	307 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	RET1	P22276	1149 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	CDC48	P25694	835 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	LYP1	P32487	611 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	ORC2	P32833	620 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	YEL1	P34225	687 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	ATG14	P38270	344 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	MED8	P38304	223 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	BIT2	P38346	545 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	CKB2	P38930	258 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	RAD55	P38953	406 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	AXL1	P40851	1208 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	GCD10	P41814	478 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	RGD2	P43556	714 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	SHE4	P51534	789 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	NUT1	P53114	1132 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	YMR111C	Q04461	462 aa	Predicted RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	ERB1	Q04660	807 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	MDM36	Q06820	579 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	SMF3	Q12078	473 aa	Predicted RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	TAH18	Q12181	623 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	NUP188	P52593	1655 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	CDC9	P04819	755 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	RIP-Chip
AVT1	YJR001W	RPB2	P08518	1224 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	VMA2	P16140	517 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	SFL1	P20134	766 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	SUI2	P20459	304 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	REC107	P21651	314 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	SEC15	P22224	910 aa		4.76	□□□□□ -1.65
AVT1	YJR001W	MCM3	P24279	971 aa	Known RBP	4.76	□□□□□ -1.65
AVT1	YJR001W	VMA3	P25515	160 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms