RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W YPL150WQ12152 901 aa3.49□□□□□ -1.85
USE1YGL098W SCM3Q12334 223 aa3.49□□□□□ -1.85
USE1YGL098W LSO2Q3E772 92 aaKnown RBP3.49□□□□□ -1.85
USE1YGL098W ENO1P00924 437 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W RPS19AP07280 144 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W RPS19BP07281 144 aaPredicted RBP3.48□□□□□ -1.85
USE1YGL098W SEN2P16658 377 aa3.48□□□□□ -1.85
USE1YGL098W RDS2P19541 446 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W PRP4P20053 465 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W VPS1P21576 704 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W RAD53P22216 821 aa3.48□□□□□ -1.85
USE1YGL098W YCR016WP25617 290 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W SEC21P32074 935 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W GUT2P32191 649 aa3.48□□□□□ -1.85
USE1YGL098W SIN4P32259 974 aa3.48□□□□□ -1.85
USE1YGL098W EFT1P32324 842 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W SRP40P32583 406 aaPredicted RBP3.48□□□□□ -1.85
USE1YGL098W SSE1P32589 693 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W RTG2P32608 588 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W SEC6P32844 805 aa3.48□□□□□ -1.85
USE1YGL098W SMY2P32909 740 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W STE13P33894 931 aa3.48□□□□□ -1.85
USE1YGL098W KES1P35844 434 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W BOI1P38041 980 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W MAL33P38157 468 aa3.48□□□□□ -1.85
USE1YGL098W RFT1P38206 574 aaPredicted RBP3.48□□□□□ -1.85
USE1YGL098W EFM2P38347 419 aa3.48□□□□□ -1.85
USE1YGL098W SOH1P38633 127 aa3.48□□□□□ -1.85
USE1YGL098W SIP3P38717 1229 aa3.48□□□□□ -1.85
USE1YGL098W YHL017WP38745 532 aa3.48□□□□□ -1.85
USE1YGL098W CIC1P38779 376 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W REV7P38927 245 aa3.48□□□□□ -1.85
USE1YGL098W SSN3P39073 555 aa3.48□□□□□ -1.85
USE1YGL098W TIF4631P39935 952 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W VTC2P43585 828 aa3.48□□□□□ -1.85
USE1YGL098W STB2P46679 850 aa3.48□□□□□ -1.85
USE1YGL098W YGL176CP46945 554 aa3.48□□□□□ -1.85
USE1YGL098W TMA22P47089 198 aaPredicted RBP3.48□□□□□ -1.85
USE1YGL098W PCL10P53124 433 aa3.48□□□□□ -1.85
USE1YGL098W PKH1Q03407 766 aa3.48□□□□□ -1.85
USE1YGL098W MSH6Q03834 1242 aa3.48□□□□□ -1.85
USE1YGL098W MAG2Q06436 670 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W BDF2Q07442 638 aa3.48□□□□□ -1.85
USE1YGL098W NOB1Q08444 459 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W GPR1Q12361 961 aa3.48□□□□□ -1.85
USE1YGL098W RTP1Q12751 981 aa3.48□□□□□ -1.85
USE1YGL098W RPO41P13433 1351 aaKnown RBP3.48□□□□□ -1.85
USE1YGL098W TY1B-DR3Q99231 1755 aa3.48□□□□□ -1.85
USE1YGL098W IML1P47170 1584 aa3.47□□□□□ -1.85
USE1YGL098W LPD1P09624 499 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W YML002WP0CF17 737 aa3.47□□□□□ -1.85
USE1YGL098W RSR1P13856 272 aa3.47□□□□□ -1.85
USE1YGL098W GCN3P14741 305 aa3.47□□□□□ -1.85
USE1YGL098W NMT1P14743 455 aa3.47□□□□□ -1.85
USE1YGL098W PWP1P21304 576 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W MSB1P21339 1137 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W REC107P21651 314 aa3.47□□□□□ -1.85
USE1YGL098W CLB2P24869 491 aa3.47□□□□□ -1.85
USE1YGL098W KIP1P28742 1111 aa3.47□□□□□ -1.85
USE1YGL098W PYC2P32327 1180 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W SAS3P34218 831 aa3.47□□□□□ -1.85
USE1YGL098W YKR015CP36111 568 aa3.47□□□□□ -1.85
USE1YGL098W JNM1P36224 373 aa3.47□□□□□ -1.85
USE1YGL098W MRPL40P36534 297 aa3.47□□□□□ -1.85
USE1YGL098W TAT1P38085 619 aa3.47□□□□□ -1.85
USE1YGL098W SPP381P38282 291 aaPredicted RBP3.47□□□□□ -1.85
USE1YGL098W SMF1P38925 575 aa3.47□□□□□ -1.85
USE1YGL098W YHB1P39676 399 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W BOI2P39969 1040 aa3.47□□□□□ -1.85
USE1YGL098W MAM1P40065 302 aa3.47□□□□□ -1.85
USE1YGL098W SDS3P40505 327 aa3.47□□□□□ -1.85
USE1YGL098W AXL1P40851 1208 aa3.47□□□□□ -1.85
USE1YGL098W PHB1P40961 287 aa3.47□□□□□ -1.85
USE1YGL098W FYV8P46949 817 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W ENT3P47160 408 aa3.47□□□□□ -1.85
USE1YGL098W IMD4P50094 524 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W UBP15P50101 1230 aa3.47□□□□□ -1.85
USE1YGL098W MCM6P53091 1017 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W MDR1P53258 950 aa3.47□□□□□ -1.85
USE1YGL098W BNI5P53890 448 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W BOP3P53958 396 aa3.47□□□□□ -1.85
USE1YGL098W CTF4Q01454 927 aa3.47□□□□□ -1.85
USE1YGL098W VPS16Q03308 798 aa3.47□□□□□ -1.85
USE1YGL098W SXM1Q04175 944 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W UTP5Q04177 643 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W GFD1Q04839 188 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W GTB1Q04924 702 aa3.47□□□□□ -1.85
USE1YGL098W ISR1Q06098 443 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W YPR172WQ06608 200 aa3.47□□□□□ -1.85
USE1YGL098W YOR296WQ08748 1289 aa3.47□□□□□ -1.85
USE1YGL098W RSA1Q08932 381 aa3.47□□□□□ -1.85
USE1YGL098W DCS2Q12123 353 aa3.47□□□□□ -1.85
USE1YGL098W NOT5Q12514 560 aaPredicted RBP3.47□□□□□ -1.85
USE1YGL098W HTZ1Q12692 134 aaKnown RBP3.47□□□□□ -1.85
USE1YGL098W YDR461C-AQ2V2P7 80 aa3.47□□□□□ -1.85
USE1YGL098W MLP1Q02455 1875 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W RPL22AP05749 121 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W HMG1P12683 1054 aa3.46□□□□□ -1.86
USE1YGL098W SEC63P14906 663 aa3.46□□□□□ -1.86
USE1YGL098W CKI1P20485 582 aa3.46□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms