RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USE1	YGL098W	YPL150W	Q12152	901 aa		3.49	□□□□□ -1.85
USE1	YGL098W	SCM3	Q12334	223 aa		3.49	□□□□□ -1.85
USE1	YGL098W	LSO2	Q3E772	92 aa	Known RBP	3.49	□□□□□ -1.85
USE1	YGL098W	ENO1	P00924	437 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	RPS19A	P07280	144 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	RPS19B	P07281	144 aa	Predicted RBP	3.48	□□□□□ -1.85
USE1	YGL098W	SEN2	P16658	377 aa		3.48	□□□□□ -1.85
USE1	YGL098W	RDS2	P19541	446 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	PRP4	P20053	465 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	VPS1	P21576	704 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	RAD53	P22216	821 aa		3.48	□□□□□ -1.85
USE1	YGL098W	YCR016W	P25617	290 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	SEC21	P32074	935 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	GUT2	P32191	649 aa		3.48	□□□□□ -1.85
USE1	YGL098W	SIN4	P32259	974 aa		3.48	□□□□□ -1.85
USE1	YGL098W	EFT1	P32324	842 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	SRP40	P32583	406 aa	Predicted RBP	3.48	□□□□□ -1.85
USE1	YGL098W	SSE1	P32589	693 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	RTG2	P32608	588 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	SEC6	P32844	805 aa		3.48	□□□□□ -1.85
USE1	YGL098W	SMY2	P32909	740 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	STE13	P33894	931 aa		3.48	□□□□□ -1.85
USE1	YGL098W	KES1	P35844	434 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	BOI1	P38041	980 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	MAL33	P38157	468 aa		3.48	□□□□□ -1.85
USE1	YGL098W	RFT1	P38206	574 aa	Predicted RBP	3.48	□□□□□ -1.85
USE1	YGL098W	EFM2	P38347	419 aa		3.48	□□□□□ -1.85
USE1	YGL098W	SOH1	P38633	127 aa		3.48	□□□□□ -1.85
USE1	YGL098W	SIP3	P38717	1229 aa		3.48	□□□□□ -1.85
USE1	YGL098W	YHL017W	P38745	532 aa		3.48	□□□□□ -1.85
USE1	YGL098W	CIC1	P38779	376 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	REV7	P38927	245 aa		3.48	□□□□□ -1.85
USE1	YGL098W	SSN3	P39073	555 aa		3.48	□□□□□ -1.85
USE1	YGL098W	TIF4631	P39935	952 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	VTC2	P43585	828 aa		3.48	□□□□□ -1.85
USE1	YGL098W	STB2	P46679	850 aa		3.48	□□□□□ -1.85
USE1	YGL098W	YGL176C	P46945	554 aa		3.48	□□□□□ -1.85
USE1	YGL098W	TMA22	P47089	198 aa	Predicted RBP	3.48	□□□□□ -1.85
USE1	YGL098W	PCL10	P53124	433 aa		3.48	□□□□□ -1.85
USE1	YGL098W	PKH1	Q03407	766 aa		3.48	□□□□□ -1.85
USE1	YGL098W	MSH6	Q03834	1242 aa		3.48	□□□□□ -1.85
USE1	YGL098W	MAG2	Q06436	670 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	BDF2	Q07442	638 aa		3.48	□□□□□ -1.85
USE1	YGL098W	NOB1	Q08444	459 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	GPR1	Q12361	961 aa		3.48	□□□□□ -1.85
USE1	YGL098W	RTP1	Q12751	981 aa		3.48	□□□□□ -1.85
USE1	YGL098W	RPO41	P13433	1351 aa	Known RBP	3.48	□□□□□ -1.85
USE1	YGL098W	TY1B-DR3	Q99231	1755 aa		3.48	□□□□□ -1.85
USE1	YGL098W	IML1	P47170	1584 aa		3.47	□□□□□ -1.85
USE1	YGL098W	LPD1	P09624	499 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	YML002W	P0CF17	737 aa		3.47	□□□□□ -1.85
USE1	YGL098W	RSR1	P13856	272 aa		3.47	□□□□□ -1.85
USE1	YGL098W	GCN3	P14741	305 aa		3.47	□□□□□ -1.85
USE1	YGL098W	NMT1	P14743	455 aa		3.47	□□□□□ -1.85
USE1	YGL098W	PWP1	P21304	576 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	MSB1	P21339	1137 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	REC107	P21651	314 aa		3.47	□□□□□ -1.85
USE1	YGL098W	CLB2	P24869	491 aa		3.47	□□□□□ -1.85
USE1	YGL098W	KIP1	P28742	1111 aa		3.47	□□□□□ -1.85
USE1	YGL098W	PYC2	P32327	1180 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	SAS3	P34218	831 aa		3.47	□□□□□ -1.85
USE1	YGL098W	YKR015C	P36111	568 aa		3.47	□□□□□ -1.85
USE1	YGL098W	JNM1	P36224	373 aa		3.47	□□□□□ -1.85
USE1	YGL098W	MRPL40	P36534	297 aa		3.47	□□□□□ -1.85
USE1	YGL098W	TAT1	P38085	619 aa		3.47	□□□□□ -1.85
USE1	YGL098W	SPP381	P38282	291 aa	Predicted RBP	3.47	□□□□□ -1.85
USE1	YGL098W	SMF1	P38925	575 aa		3.47	□□□□□ -1.85
USE1	YGL098W	YHB1	P39676	399 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	BOI2	P39969	1040 aa		3.47	□□□□□ -1.85
USE1	YGL098W	MAM1	P40065	302 aa		3.47	□□□□□ -1.85
USE1	YGL098W	SDS3	P40505	327 aa		3.47	□□□□□ -1.85
USE1	YGL098W	AXL1	P40851	1208 aa		3.47	□□□□□ -1.85
USE1	YGL098W	PHB1	P40961	287 aa		3.47	□□□□□ -1.85
USE1	YGL098W	FYV8	P46949	817 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	ENT3	P47160	408 aa		3.47	□□□□□ -1.85
USE1	YGL098W	IMD4	P50094	524 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	UBP15	P50101	1230 aa		3.47	□□□□□ -1.85
USE1	YGL098W	MCM6	P53091	1017 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	MDR1	P53258	950 aa		3.47	□□□□□ -1.85
USE1	YGL098W	BNI5	P53890	448 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	BOP3	P53958	396 aa		3.47	□□□□□ -1.85
USE1	YGL098W	CTF4	Q01454	927 aa		3.47	□□□□□ -1.85
USE1	YGL098W	VPS16	Q03308	798 aa		3.47	□□□□□ -1.85
USE1	YGL098W	SXM1	Q04175	944 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	UTP5	Q04177	643 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	GFD1	Q04839	188 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	GTB1	Q04924	702 aa		3.47	□□□□□ -1.85
USE1	YGL098W	ISR1	Q06098	443 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	YPR172W	Q06608	200 aa		3.47	□□□□□ -1.85
USE1	YGL098W	YOR296W	Q08748	1289 aa		3.47	□□□□□ -1.85
USE1	YGL098W	RSA1	Q08932	381 aa		3.47	□□□□□ -1.85
USE1	YGL098W	DCS2	Q12123	353 aa		3.47	□□□□□ -1.85
USE1	YGL098W	NOT5	Q12514	560 aa	Predicted RBP	3.47	□□□□□ -1.85
USE1	YGL098W	HTZ1	Q12692	134 aa	Known RBP	3.47	□□□□□ -1.85
USE1	YGL098W	YDR461C-A	Q2V2P7	80 aa		3.47	□□□□□ -1.85
USE1	YGL098W	MLP1	Q02455	1875 aa	Known RBP	3.46	□□□□□ -1.86
USE1	YGL098W	RPL22A	P05749	121 aa	Known RBP	3.46	□□□□□ -1.86
USE1	YGL098W	HMG1	P12683	1054 aa		3.46	□□□□□ -1.86
USE1	YGL098W	SEC63	P14906	663 aa		3.46	□□□□□ -1.86
USE1	YGL098W	CKI1	P20485	582 aa		3.46	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms