RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU56	YDR240C	EFT1	P32324	842 aa	Known RBP	4.22	□□□□□ -1.73
SNU56	YDR240C	TYE7	P33122	291 aa	Predicted RBP	4.22	□□□□□ -1.73
SNU56	YDR240C	PET10	P36139	283 aa		4.22	□□□□□ -1.73
SNU56	YDR240C	SDP1	P40479	209 aa		4.22	□□□□□ -1.73
SNU56	YDR240C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
SNU56	YDR240C	YKR011C	Q02209	353 aa		4.22	□□□□□ -1.73
SNU56	YDR240C	YML122C	Q03207	126 aa		4.22	□□□□□ -1.73
SNU56	YDR240C	TRP4	P07285	380 aa	Predicted RBP	4.21	□□□□□ -1.74
SNU56	YDR240C	URA1	P28272	314 aa	Predicted RBP	4.21	□□□□□ -1.74
SNU56	YDR240C	KTR4	P38131	464 aa		4.21	□□□□□ -1.74
SNU56	YDR240C	CTF8	P38877	133 aa		4.21	□□□□□ -1.74
SNU56	YDR240C	BUL1	P48524	976 aa		4.21	□□□□□ -1.74
SNU56	YDR240C	MPH2	P0CD99	609 aa		4.2	□□□□□ -1.74
SNU56	YDR240C	RAD4	P14736	754 aa		4.2	□□□□□ -1.74
SNU56	YDR240C	HSP60	P19882	572 aa	Known RBP	4.2	□□□□□ -1.74
SNU56	YDR240C	CAD1	P24813	409 aa	Known RBP	4.2	□□□□□ -1.74
SNU56	YDR240C	ARE1	P25628	610 aa		4.2	□□□□□ -1.74
SNU56	YDR240C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
SNU56	YDR240C	SSL1	Q04673	461 aa	Predicted RBP	4.2	□□□□□ -1.74
SNU56	YDR240C	UBX5	Q06682	500 aa		4.2	□□□□□ -1.74
SNU56	YDR240C	HBN1	Q96VH4	193 aa		4.2	□□□□□ -1.74
SNU56	YDR240C	ERT1	P38140	529 aa		4.19	□□□□□ -1.74
SNU56	YDR240C	YIL108W	P40483	696 aa	Known RBP	4.19	□□□□□ -1.74
SNU56	YDR240C	YPR071W	Q12346	211 aa		4.19	□□□□□ -1.74
SNU56	YDR240C	MSD1	P15179	658 aa	Known RBP	4.18	□□□□□ -1.74
SNU56	YDR240C	OAR1	P35731	278 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	YBR284W	P38150	797 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	HUL4	P40985	892 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	NIT3	P49954	291 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	HDA1	P53973	706 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	SLU7	Q02775	382 aa	Known RBP	4.18	□□□□□ -1.74
SNU56	YDR240C	YDL124W	Q07551	312 aa	Known RBP	4.18	□□□□□ -1.74
SNU56	YDR240C	ENV7	Q12003	364 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	RPS9A	O13516	197 aa	Known RBP	4.18	□□□□□ -1.74
SNU56	YDR240C	CIT1	P00890	479 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	SEC21	P32074	935 aa	Known RBP	4.18	□□□□□ -1.74
SNU56	YDR240C	RPD3	P32561	433 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	CEP3	P40969	608 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	UBP6	P43593	499 aa	Known RBP	4.18	□□□□□ -1.74
SNU56	YDR240C	NOG2	P53742	486 aa	Known RBP	4.18	□□□□□ -1.74
SNU56	YDR240C	PEX19	Q07418	342 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	YLR040C	Q07988	224 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	TRM11	Q12463	433 aa		4.18	□□□□□ -1.74
SNU56	YDR240C	ERG4	P25340	473 aa		4.17	□□□□□ -1.74
SNU56	YDR240C	TIM54	P47045	478 aa		4.17	□□□□□ -1.74
SNU56	YDR240C	YGR125W	P53273	1036 aa		4.17	□□□□□ -1.74
SNU56	YDR240C	ERG5	P54781	538 aa		4.17	□□□□□ -1.74
SNU56	YDR240C	TAF8	Q03750	510 aa		4.17	□□□□□ -1.74
SNU56	YDR240C	SWM1	Q12379	170 aa		4.17	□□□□□ -1.74
SNU56	YDR240C	CTF13	P35203	478 aa		4.16	□□□□□ -1.74
SNU56	YDR240C	EMC3	P36039	253 aa		4.16	□□□□□ -1.74
SNU56	YDR240C	YHR078W	P38799	552 aa		4.16	□□□□□ -1.74
SNU56	YDR240C	GGA2	P38817	585 aa	Known RBP	4.16	□□□□□ -1.74
SNU56	YDR240C	PUS2	P53167	370 aa		4.16	□□□□□ -1.74
SNU56	YDR240C	RNT1	Q02555	471 aa		4.16	□□□□□ -1.74
SNU56	YDR240C	YOL073C	Q08232	322 aa		4.16	□□□□□ -1.74
SNU56	YDR240C	TUB3	P09734	445 aa	Known RBP	4.15	□□□□□ -1.75
SNU56	YDR240C	MOH1	P38191	138 aa		4.15	□□□□□ -1.75
SNU56	YDR240C	SUL1	P38359	859 aa		4.15	□□□□□ -1.75
SNU56	YDR240C	YHR020W	P38708	688 aa	Known RBP	4.15	□□□□□ -1.75
SNU56	YDR240C	DAM1	P53267	343 aa		4.15	□□□□□ -1.75
SNU56	YDR240C	OMS1	Q06668	471 aa		4.15	□□□□□ -1.75
SNU56	YDR240C	TOP3	P13099	656 aa		4.14	□□□□□ -1.75
SNU56	YDR240C	REH1	Q06709	432 aa		4.14	□□□□□ -1.75
SNU56	YDR240C	PPM2	Q08282	695 aa		4.14	□□□□□ -1.75
SNU56	YDR240C	FLC1	Q08967	793 aa		4.14	□□□□□ -1.75
SNU56	YDR240C	PPR1	P07272	904 aa	Predicted RBP	4.13	□□□□□ -1.75
SNU56	YDR240C	MET3	P08536	511 aa		4.13	□□□□□ -1.75
SNU56	YDR240C	CYS3	P31373	394 aa	Known RBP	4.13	□□□□□ -1.75
SNU56	YDR240C	DUS1	P53759	423 aa	Known RBP	4.13	□□□□□ -1.75
SNU56	YDR240C	ASI2	P53895	289 aa		4.13	□□□□□ -1.75
SNU56	YDR240C	TOM70	P07213	617 aa	Known RBP	4.12	□□□□□ -1.75
SNU56	YDR240C	GAL11	P19659	1081 aa		4.12	□□□□□ -1.75
SNU56	YDR240C	NGG1	P32494	702 aa		4.12	□□□□□ -1.75
SNU56	YDR240C	NNF1	P47149	201 aa		4.12	□□□□□ -1.75
SNU56	YDR240C	YGR283C	P53336	341 aa	Predicted RBP	4.12	□□□□□ -1.75
SNU56	YDR240C	DLT1	Q04216	342 aa		4.12	□□□□□ -1.75
SNU56	YDR240C	BDF2	Q07442	638 aa		4.12	□□□□□ -1.75
SNU56	YDR240C	HAL9	Q12180	1030 aa		4.12	□□□□□ -1.75
SNU56	YDR240C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
SNU56	YDR240C	ALG2	P43636	503 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	UBA2	P52488	636 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	HUL5	P53119	910 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	TIM44	Q01852	431 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	ALG7	P07286	448 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	DAL7	P21826	554 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	BET3	P36149	193 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	RPP1	P38786	293 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	RSP5	P39940	809 aa	Known RBP	4.11	□□□□□ -1.75
SNU56	YDR240C	ELO3	P40319	345 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	VHR1	P40522	640 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	GYP8	P43570	497 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	ATP25	Q03153	612 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	PKH1	Q03407	766 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	NSE3	Q05541	303 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	ACF2	Q12168	779 aa		4.11	□□□□□ -1.75
SNU56	YDR240C	CAN1	P04817	590 aa		4.1	□□□□□ -1.75
SNU56	YDR240C	PZF1	P39933	429 aa		4.1	□□□□□ -1.75
SNU56	YDR240C	TAD1	P53065	400 aa		4.1	□□□□□ -1.75
SNU56	YDR240C	YDR514C	Q04408	483 aa		4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 52 ms