RNA–Protein interactions for RNA: YNR006W

VPS27, Transcript of Endosomal protein that forms a complex with Hse1p, yeast

Gene VPS27, Length 1,869 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS27	YNR006W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
VPS27	YNR006W	YNR063W	P53749	607 aa		4.58	□□□□□ -1.68
VPS27	YNR006W	MLC2	Q06580	163 aa		4.58	□□□□□ -1.68
VPS27	YNR006W	SNU66	Q12420	587 aa	Predicted RBP	4.58	□□□□□ -1.68
VPS27	YNR006W	DAL3	P32459	195 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	PTH2	P34222	208 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	YEL1	P34225	687 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	MAE1	P36013	669 aa	Known RBP	4.57	□□□□□ -1.68
VPS27	YNR006W	MAL31	P38156	614 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	OAF1	P39720	1047 aa	Predicted RBP	4.57	□□□□□ -1.68
VPS27	YNR006W	ALG2	P43636	503 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	YGR035C	P53222	116 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	YGR045C	P53229	120 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	BUL2	Q03758	920 aa	Known RBP	4.57	□□□□□ -1.68
VPS27	YNR006W	PSR2	Q07949	397 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	YPR071W	Q12346	211 aa		4.57	□□□□□ -1.68
VPS27	YNR006W	AEP2	P22136	580 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	DBF20	P32328	564 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	PRP19	P32523	503 aa	Known RBP	4.56	□□□□□ -1.68
VPS27	YNR006W	SPC29	P33419	253 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	MCM7	P38132	845 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	ALG3	P38179	458 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	YAR028W	P39548	234 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	DSE4	P53753	1117 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	SNP1	Q00916	300 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS27	YNR006W	YMR074C	Q04773	145 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	YLL054C	Q12244	843 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	RTP1	Q12751	981 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	FOB1	O13329	566 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
VPS27	YNR006W	RIM4	P38741	713 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	SIT1	P39980	628 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	UBA2	P52488	636 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	YDR306C	Q06640	478 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	SSP2	Q08646	371 aa		4.56	□□□□□ -1.68
VPS27	YNR006W	YTM1	Q12024	460 aa	Predicted RBP	4.56	□□□□□ -1.68
VPS27	YNR006W	ERT1	P38140	529 aa		4.55	□□□□□ -1.68
VPS27	YNR006W	PCM1	P38628	557 aa	Known RBP	4.55	□□□□□ -1.68
VPS27	YNR006W	RRM3	P38766	723 aa		4.55	□□□□□ -1.68
VPS27	YNR006W	CKB2	P38930	258 aa		4.55	□□□□□ -1.68
VPS27	YNR006W	REH1	Q06709	432 aa		4.55	□□□□□ -1.68
VPS27	YNR006W	AVO1	Q08236	1176 aa		4.55	□□□□□ -1.68
VPS27	YNR006W	HEM12	P32347	362 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS27	YNR006W	AFR1	P33304	620 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	YKL133C	P36066	463 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	ATG14	P38270	344 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	HSE1	P38753	452 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	HIS6	P40545	261 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	SAP185	P40856	1058 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	SBE2	P42223	864 aa	Known RBP	4.54	□□□□□ -1.68
VPS27	YNR006W	GZF3	P42944	551 aa	Known RBP	4.54	□□□□□ -1.68
VPS27	YNR006W	BNA1	P47096	177 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	ELA1	P53861	379 aa	Predicted RBP	4.54	□□□□□ -1.68
VPS27	YNR006W	LAP2	Q10740	671 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	YOR223W	Q12015	292 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	TY1A-NL1	Q12391	440 aa	Known RBP	4.54	□□□□□ -1.68
VPS27	YNR006W	PTC5	Q12511	572 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	MSS18	P08593	268 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	GFD2	P25370	566 aa	Known RBP	4.54	□□□□□ -1.68
VPS27	YNR006W	MLS1	P30952	554 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	MCM10	P32354	571 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	NDE1	P40215	560 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	GYP8	P43570	497 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	TAF1	P46677	1066 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	HNT2	P49775	206 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	NCE103	P53615	221 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	DOT1	Q04089	582 aa	Known RBP	4.54	□□□□□ -1.68
VPS27	YNR006W	PHM6	Q05637	104 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	HIF1	Q12373	385 aa		4.54	□□□□□ -1.68
VPS27	YNR006W	AAR2	P32357	355 aa	Predicted RBP	4.53	□□□□□ -1.68
VPS27	YNR006W	BLI1	P35727	113 aa		4.53	□□□□□ -1.68
VPS27	YNR006W	RGD1	P38339	666 aa		4.53	□□□□□ -1.68
VPS27	YNR006W	MNT3	P40549	630 aa		4.53	□□□□□ -1.68
VPS27	YNR006W	CAF16	P43569	289 aa		4.53	□□□□□ -1.68
VPS27	YNR006W	NPY1	P53164	384 aa		4.53	□□□□□ -1.68
VPS27	YNR006W	GUD1	Q07729	489 aa		4.53	□□□□□ -1.68
VPS27	YNR006W	INH1	P01097	85 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	YER152C	P10356	443 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	QNS1	P38795	714 aa	Known RBP	4.52	□□□□□ -1.69
VPS27	YNR006W	ACA1	P39970	489 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	MNN11	P46985	422 aa	Known RBP	4.52	□□□□□ -1.69
VPS27	YNR006W	VPS53	P47061	822 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	RSA3	Q05942	220 aa	Known RBP	4.52	□□□□□ -1.69
VPS27	YNR006W	ATG33	Q06485	197 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	GAS5	Q08193	484 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	YDR056C	Q12025	205 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	AI1	P03875	834 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	CDC31	P06704	161 aa	Known RBP	4.52	□□□□□ -1.69
VPS27	YNR006W	HMG1	P12683	1054 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	RET1	P22276	1149 aa	Known RBP	4.52	□□□□□ -1.69
VPS27	YNR006W	APL2	P36000	726 aa	Predicted RBP	4.52	□□□□□ -1.69
VPS27	YNR006W	BIT2	P38346	545 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	ESL1	P40456	1118 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	ERR3	P42222	437 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	AIM14	P53109	570 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	YGR283C	P53336	341 aa	Predicted RBP	4.52	□□□□□ -1.69
VPS27	YNR006W	PAP2	P53632	584 aa	Known RBP	4.52	□□□□□ -1.69
VPS27	YNR006W	YNR014W	P53719	212 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	YDR338C	Q05497	695 aa		4.52	□□□□□ -1.69
VPS27	YNR006W	DUS3	Q06053	668 aa	Known RBP	4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 106 ms