RNA–Protein interactions for RNA: YLR378C

SEC61, Transcript of Conserved ER protein translocation channel, yeastyeast

Gene SEC61, Length 1,443 nt, Biotype protein coding, Subcellular localisation Mitochondria, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC61YLR378C RSC30P38781 883 aa10.01□□□□□ -0.81
SEC61YLR378C SMC2P38989 1170 aaKnown RBP10.01□□□□□ -0.81
SEC61YLR378C VFA1P40080 203 aa10.01□□□□□ -0.81
SEC61YLR378C YAP5P40574 245 aa10.01□□□□□ -0.81
SEC61YLR378C COS5P47187 383 aa10.01□□□□□ -0.81
SEC61YLR378C YGL039WP53183 348 aaKnown RBP10.01□□□□□ -0.81
SEC61YLR378C UTP5Q04177 643 aaKnown RBP10.01□□□□□ -0.81
SEC61YLR378C OPY2Q06810 360 aa10.01□□□□□ -0.81
SEC61YLR378C SMC5Q08204 1093 aa10.01□□□□□ -0.81
SEC61YLR378C TRK2P28584 889 aa10□□□□□ -0.81
SEC61YLR378C TFC4P33339 1025 aa10□□□□□ -0.81
SEC61YLR378C PGM2P37012 569 aaKnown RBP10□□□□□ -0.81
SEC61YLR378C SPR3P41901 512 aa10□□□□□ -0.81
SEC61YLR378C VPS53P47061 822 aa10□□□□□ -0.81
SEC61YLR378C HFM1P51979 1187 aa10□□□□□ -0.81
SEC61YLR378C CST9Q06032 482 aa10□□□□□ -0.81
SEC61YLR378C CWC2Q12046 339 aaPredicted RBP10□□□□□ -0.81
SEC61YLR378C PET123P17558 318 aa9.99□□□□□ -0.81
SEC61YLR378C APT1P49435 187 aaKnown RBP9.99□□□□□ -0.81
SEC61YLR378C CTR1P49573 406 aa9.99□□□□□ -0.81
SEC61YLR378C HOS3Q02959 697 aaKnown RBP9.99□□□□□ -0.81
SEC61YLR378C UME1Q03010 460 aa9.99□□□□□ -0.81
SEC61YLR378C MSC6Q08818 692 aaKnown RBP9.99□□□□□ -0.81
SEC61YLR378C YOL098CQ12496 1037 aa9.99□□□□□ -0.81
SEC61YLR378C MTF2P10849 440 aa9.99□□□□□ -0.81
SEC61YLR378C YSC83P32792 385 aa9.99□□□□□ -0.81
SEC61YLR378C NIP100P33420 868 aa9.99□□□□□ -0.81
SEC61YLR378C ASH1P34233 588 aa9.99□□□□□ -0.81
SEC61YLR378C APE3P37302 537 aaKnown RBP9.99□□□□□ -0.81
SEC61YLR378C YEL025CP39991 1188 aa9.99□□□□□ -0.81
SEC61YLR378C VPS60Q03390 229 aa9.99□□□□□ -0.81
SEC61YLR378C DUS4Q06063 367 aa9.99□□□□□ -0.81
SEC61YLR378C YPR078CQ06813 372 aa9.99□□□□□ -0.81
SEC61YLR378C RLP24Q07915 199 aaKnown RBP9.99□□□□□ -0.81
SEC61YLR378C NEW1Q08972 1196 aaKnown RBP9.99□□□□□ -0.81
SEC61YLR378C SCP160P06105 1222 aaKnown RBP RIP-Chip data9.98□□□□□ -0.81 RIP-Chip
SEC61YLR378C SEC23P15303 768 aaKnown RBP9.98□□□□□ -0.81
SEC61YLR378C SPO12P17123 173 aa9.98□□□□□ -0.81
SEC61YLR378C UBP5P39944 805 aa9.98□□□□□ -0.81
SEC61YLR378C ATG3P40344 310 aa9.98□□□□□ -0.81
SEC61YLR378C SHQ1P40486 507 aaPredicted RBP9.98□□□□□ -0.81
SEC61YLR378C MDR1P53258 950 aa9.98□□□□□ -0.81
SEC61YLR378C ARK1P53974 638 aa9.98□□□□□ -0.81
SEC61YLR378C ERG5P54781 538 aa9.98□□□□□ -0.81
SEC61YLR378C NOC3Q07896 663 aaPredicted RBP9.98□□□□□ -0.81
SEC61YLR378C CHS2P14180 963 aa9.97□□□□□ -0.81
SEC61YLR378C COT1P32798 439 aa9.97□□□□□ -0.81
SEC61YLR378C SMC1P32908 1225 aa9.97□□□□□ -0.81
SEC61YLR378C XRS2P33301 854 aa9.97□□□□□ -0.81
SEC61YLR378C KTR2P33550 425 aa9.97□□□□□ -0.81
SEC61YLR378C ATG1P53104 897 aa9.97□□□□□ -0.81
SEC61YLR378C MLH2Q07980 695 aa9.97□□□□□ -0.81
SEC61YLR378C YLL058WQ12198 575 aa9.97□□□□□ -0.81
SEC61YLR378C NOP58Q12499 511 aaKnown RBP9.97□□□□□ -0.81
SEC61YLR378C PPR1P07272 904 aaPredicted RBP9.96□□□□□ -0.82
SEC61YLR378C PDC6P26263 563 aaKnown RBP9.96□□□□□ -0.82
SEC61YLR378C STO1P34160 861 aaKnown RBP9.96□□□□□ -0.82
SEC61YLR378C YEL1P34225 687 aa9.96□□□□□ -0.82
SEC61YLR378C CEP3P40969 608 aa9.96□□□□□ -0.82
SEC61YLR378C IES1P43579 692 aa9.96□□□□□ -0.82
SEC61YLR378C CAF130P53280 1122 aaPredicted RBP9.96□□□□□ -0.82
SEC61YLR378C FAL1Q12099 399 aaKnown RBP9.96□□□□□ -0.82
SEC61YLR378C OSW2Q12202 724 aa9.96□□□□□ -0.82
SEC61YLR378C RPL17AP05740 184 aaKnown RBP9.95□□□□□ -0.82
SEC61YLR378C NAM7P30771 971 aaKnown RBP9.95□□□□□ -0.82
SEC61YLR378C RPL17BP46990 184 aaKnown RBP9.95□□□□□ -0.82
SEC61YLR378C TIM8P57744 87 aa9.95□□□□□ -0.82
SEC61YLR378C ROD1Q02805 837 aa9.95□□□□□ -0.82
SEC61YLR378C YLR297WQ05899 129 aa9.95□□□□□ -0.82
SEC61YLR378C GPI13Q07830 1017 aa9.95□□□□□ -0.82
SEC61YLR378C TRM11Q12463 433 aa9.95□□□□□ -0.82
SEC61YLR378C SSD1P24276 1250 aaKnown RBP RIP-Chip data9.94□□□□□ -0.82not detected
SEC61YLR378C SRB4P32569 687 aa9.94□□□□□ -0.82
SEC61YLR378C RGT1P32862 1170 aa9.94□□□□□ -0.82
SEC61YLR378C DBP7P36120 742 aaKnown RBP9.94□□□□□ -0.82
SEC61YLR378C MCX1P38323 520 aaPredicted RBP9.94□□□□□ -0.82
SEC61YLR378C SEC9P40357 651 aa9.94□□□□□ -0.82
SEC61YLR378C NDC80P40460 691 aa9.94□□□□□ -0.82
SEC61YLR378C DON1Q05610 365 aa9.94□□□□□ -0.82
SEC61YLR378C TSR1Q07381 788 aaKnown RBP9.94□□□□□ -0.82
SEC61YLR378C NCR1Q12200 1170 aa9.94□□□□□ -0.82
SEC61YLR378C SFI1Q12369 946 aa9.94□□□□□ -0.82
SEC61YLR378C DED1P06634 604 aaKnown RBP9.93□□□□□ -0.82
SEC61YLR378C PET111P08468 800 aa9.93□□□□□ -0.82
SEC61YLR378C UBC1P21734 215 aaKnown RBP9.93□□□□□ -0.82
SEC61YLR378C TIM23P32897 222 aa9.93□□□□□ -0.82
SEC61YLR378C JNM1P36224 373 aa9.93□□□□□ -0.82
SEC61YLR378C ERC1P38767 581 aa9.93□□□□□ -0.82
SEC61YLR378C EAF5P39995 279 aa9.93□□□□□ -0.82
SEC61YLR378C MXR1P40029 184 aa9.93□□□□□ -0.82
SEC61YLR378C LCB2P40970 561 aa9.93□□□□□ -0.82
SEC61YLR378C FIG4P42837 879 aa9.93□□□□□ -0.82
SEC61YLR378C PSP2P50109 593 aaKnown RBP9.93□□□□□ -0.82
SEC61YLR378C TAM41P53230 385 aa9.93□□□□□ -0.82
SEC61YLR378C RTT102P53330 157 aa9.93□□□□□ -0.82
SEC61YLR378C YMR321CQ04898 105 aa9.93□□□□□ -0.82
SEC61YLR378C SML1Q04964 104 aa9.93□□□□□ -0.82
SEC61YLR378C MET7Q08645 548 aa9.93□□□□□ -0.82
SEC61YLR378C RME1P32338 300 aaKnown RBP9.92□□□□□ -0.82
SEC61YLR378C IRE1P32361 1115 aa9.92□□□□□ -0.82
Retrieved 100 of 5,963 RNA–protein pairs in 17.6 ms