RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeast

Gene ATG38, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG38	YLR211C	SPE1	P08432	466 aa		5.22	□□□□□ -1.57
ATG38	YLR211C	TSL1	P38427	1098 aa	Known RBP	5.22	□□□□□ -1.57
ATG38	YLR211C	KRI1	P42846	591 aa	Known RBP	5.22	□□□□□ -1.57
ATG38	YLR211C	GYP7	P48365	746 aa		5.22	□□□□□ -1.57
ATG38	YLR211C	PHO23	P50947	330 aa		5.22	□□□□□ -1.57
ATG38	YLR211C	YDR306C	Q06640	478 aa		5.22	□□□□□ -1.57
ATG38	YLR211C	WHI4	Q07655	649 aa	Known RBP	5.22	□□□□□ -1.57
ATG38	YLR211C	MRP8	P35719	219 aa		5.21	□□□□□ -1.58
ATG38	YLR211C	ERT1	P38140	529 aa		5.21	□□□□□ -1.58
ATG38	YLR211C	YBR184W	P38299	523 aa		5.21	□□□□□ -1.58
ATG38	YLR211C	PFD1	P46988	109 aa		5.21	□□□□□ -1.58
ATG38	YLR211C	TDA5	Q06417	326 aa	Known RBP	5.21	□□□□□ -1.58
ATG38	YLR211C	HSF1	P10961	833 aa		5.2	□□□□□ -1.58
ATG38	YLR211C	HCM1	P25364	564 aa		5.2	□□□□□ -1.58
ATG38	YLR211C	DCG1	P32460	244 aa		5.2	□□□□□ -1.58
ATG38	YLR211C	HBS1	P32769	611 aa	Known RBP	5.2	□□□□□ -1.58
ATG38	YLR211C	PBY1	P38254	753 aa		5.2	□□□□□ -1.58
ATG38	YLR211C	YKE2	P52553	114 aa		5.2	□□□□□ -1.58
ATG38	YLR211C	SSF2	Q12153	453 aa	Predicted RBP	5.2	□□□□□ -1.58
ATG38	YLR211C	KCS1	Q12494	1050 aa		5.2	□□□□□ -1.58
ATG38	YLR211C	PMA1	P05030	918 aa	Known RBP	5.19	□□□□□ -1.58
ATG38	YLR211C	YER158C	P40095	573 aa		5.19	□□□□□ -1.58
ATG38	YLR211C	IRR1	P40541	1150 aa		5.19	□□□□□ -1.58
ATG38	YLR211C	BUL2	Q03758	920 aa	Known RBP	5.19	□□□□□ -1.58
ATG38	YLR211C	NTO1	Q12311	748 aa		5.19	□□□□□ -1.58
ATG38	YLR211C	TUB2	P02557	457 aa	Known RBP	5.18	□□□□□ -1.58
ATG38	YLR211C	GRX1	P25373	110 aa	Known RBP	5.18	□□□□□ -1.58
ATG38	YLR211C	YBR238C	P38330	731 aa	Known RBP	5.18	□□□□□ -1.58
ATG38	YLR211C	URM1	P40554	99 aa	Predicted RBP	5.18	□□□□□ -1.58
ATG38	YLR211C	EXG2	P52911	562 aa		5.18	□□□□□ -1.58
ATG38	YLR211C	LAS17	Q12446	633 aa		5.18	□□□□□ -1.58
ATG38	YLR211C	TRM2	P33753	639 aa		5.17	□□□□□ -1.58
ATG38	YLR211C	YKR078W	P36158	585 aa	Known RBP	5.17	□□□□□ -1.58
ATG38	YLR211C	CCC2	P38995	1004 aa		5.17	□□□□□ -1.58
ATG38	YLR211C	SIT1	P39980	628 aa		5.17	□□□□□ -1.58
ATG38	YLR211C	NCS6	P53088	359 aa		5.17	□□□□□ -1.58
ATG38	YLR211C	SLI1	P53304	468 aa		5.17	□□□□□ -1.58
ATG38	YLR211C	SUN4	P53616	420 aa		5.17	□□□□□ -1.58
ATG38	YLR211C	GSF2	Q04697	403 aa	Known RBP	5.17	□□□□□ -1.58
ATG38	YLR211C	FMP25	Q08023	583 aa		5.17	□□□□□ -1.58
ATG38	YLR211C	PPH3	P32345	308 aa		5.16	□□□□□ -1.58
ATG38	YLR211C	AAR2	P32357	355 aa	Predicted RBP	5.16	□□□□□ -1.58
ATG38	YLR211C	PUS9	Q12069	462 aa		5.16	□□□□□ -1.58
ATG38	YLR211C	RPC82	P32349	654 aa		5.15	□□□□□ -1.59
ATG38	YLR211C	YRO2	P38079	344 aa		5.15	□□□□□ -1.59
ATG38	YLR211C	YPR196W	Q06595	470 aa		5.15	□□□□□ -1.59
ATG38	YLR211C	UPC2	Q12151	913 aa		5.15	□□□□□ -1.59
ATG38	YLR211C	NPC2	Q12408	173 aa		5.15	□□□□□ -1.59
ATG38	YLR211C	CDC48	P25694	835 aa	Known RBP	5.14	□□□□□ -1.59
ATG38	YLR211C	STE14	P32584	239 aa		5.14	□□□□□ -1.59
ATG38	YLR211C	DEF1	P35732	738 aa	Known RBP	5.14	□□□□□ -1.59
ATG38	YLR211C	TOK1	P40310	691 aa		5.14	□□□□□ -1.59
ATG38	YLR211C	PSP2	P50109	593 aa	Known RBP	5.14	□□□□□ -1.59
ATG38	YLR211C	SLU7	Q02775	382 aa	Known RBP	5.14	□□□□□ -1.59
ATG38	YLR211C	ADE8	P04161	214 aa		5.13	□□□□□ -1.59
ATG38	YLR211C	NOT3	P06102	836 aa	Known RBP	5.13	□□□□□ -1.59
ATG38	YLR211C	RPL8B	P29453	256 aa	Known RBP	5.13	□□□□□ -1.59
ATG38	YLR211C	PMI40	P29952	429 aa	Known RBP	5.13	□□□□□ -1.59
ATG38	YLR211C	MSS4	P38994	779 aa		5.13	□□□□□ -1.59
ATG38	YLR211C	MSE1	P48525	536 aa		5.13	□□□□□ -1.59
ATG38	YLR211C	RAI1	P53063	387 aa	Known RBP	5.13	□□□□□ -1.59
ATG38	YLR211C	UTP8	P53276	713 aa	Known RBP	5.13	□□□□□ -1.59
ATG38	YLR211C	KIN4	Q01919	800 aa		5.13	□□□□□ -1.59
ATG38	YLR211C	SSL1	Q04673	461 aa	Predicted RBP	5.13	□□□□□ -1.59
ATG38	YLR211C	KAR4	P25583	335 aa		5.12	□□□□□ -1.59
ATG38	YLR211C	YBR284W	P38150	797 aa		5.12	□□□□□ -1.59
ATG38	YLR211C	CHS7	P38843	316 aa		5.12	□□□□□ -1.59
ATG38	YLR211C	ALR2	P43553	858 aa		5.12	□□□□□ -1.59
ATG38	YLR211C	BUL1	P48524	976 aa		5.12	□□□□□ -1.59
ATG38	YLR211C	UBX5	Q06682	500 aa		5.12	□□□□□ -1.59
ATG38	YLR211C	WRS1	Q12109	432 aa	Known RBP	5.12	□□□□□ -1.59
ATG38	YLR211C	YPR071W	Q12346	211 aa		5.12	□□□□□ -1.59
ATG38	YLR211C	FBP1	P09201	348 aa		5.11	□□□□□ -1.59
ATG38	YLR211C	PRP9	P19736	530 aa	Known RBP	5.11	□□□□□ -1.59
ATG38	YLR211C	RPD3	P32561	433 aa		5.11	□□□□□ -1.59
ATG38	YLR211C	STE13	P33894	931 aa		5.11	□□□□□ -1.59
ATG38	YLR211C	ATG19	P35193	415 aa		5.11	□□□□□ -1.59
ATG38	YLR211C	NAN1	Q02931	896 aa	Known RBP	5.11	□□□□□ -1.59
ATG38	YLR211C	HBN1	Q96VH4	193 aa		5.11	□□□□□ -1.59
ATG38	YLR211C	RPP2A	P05319	106 aa	Known RBP	5.1	□□□□□ -1.59
ATG38	YLR211C	LCD1	Q04377	747 aa		5.1	□□□□□ -1.59
ATG38	YLR211C	PNS1	Q12412	539 aa		5.1	□□□□□ -1.59
ATG38	YLR211C	TOP3	P13099	656 aa		5.09	□□□□□ -1.59
ATG38	YLR211C	RAD4	P14736	754 aa		5.09	□□□□□ -1.59
ATG38	YLR211C	PFK1	P16861	987 aa	Known RBP	5.09	□□□□□ -1.59
ATG38	YLR211C	AIM21	P40563	679 aa		5.09	□□□□□ -1.59
ATG38	YLR211C	HDA1	P53973	706 aa		5.09	□□□□□ -1.59
ATG38	YLR211C	MSD1	P15179	658 aa	Known RBP	5.08	□□□□□ -1.6
ATG38	YLR211C	IOC3	P43596	787 aa		5.08	□□□□□ -1.6
ATG38	YLR211C	EAF1	Q06337	982 aa		5.08	□□□□□ -1.6
ATG38	YLR211C	ENB1	Q08299	606 aa		5.08	□□□□□ -1.6
ATG38	YLR211C	HRR25	P29295	494 aa	Known RBP	5.07	□□□□□ -1.6
ATG38	YLR211C	REC104	P33323	182 aa		5.07	□□□□□ -1.6
ATG38	YLR211C	PET10	P36139	283 aa		5.07	□□□□□ -1.6
ATG38	YLR211C	YHR020W	P38708	688 aa	Known RBP	5.07	□□□□□ -1.6
ATG38	YLR211C	CCM1	P48237	864 aa	Predicted RBP	5.07	□□□□□ -1.6
ATG38	YLR211C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.07	□□□□□ -1.6	not detected
ATG38	YLR211C	SED4	P25365	1065 aa		5.06	□□□□□ -1.6
ATG38	YLR211C	ERP6	P53198	216 aa		5.06	□□□□□ -1.6
ATG38	YLR211C	TPO2	P53283	614 aa		5.06	□□□□□ -1.6

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