RNA–Protein interactions for RNA: YIL138C

TPM2, Transcript of Minor isoform of tropomyosin, yeast

Gene TPM2, Length 486 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPM2	YIL138C	UBA2	P52488	636 aa		4.3	□□□□□ -1.72
TPM2	YIL138C	HRQ1	Q05549	1077 aa		4.3	□□□□□ -1.72
TPM2	YIL138C	EFT1	P32324	842 aa	Known RBP	4.29	□□□□□ -1.72
TPM2	YIL138C	MNR2	P35724	969 aa		4.29	□□□□□ -1.72
TPM2	YIL138C	YKL151C	P36059	337 aa		4.29	□□□□□ -1.72
TPM2	YIL138C	NCS6	P53088	359 aa		4.29	□□□□□ -1.72
TPM2	YIL138C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.28	□□□□□ -1.72	not detected
TPM2	YIL138C	GIC1	P38785	314 aa		4.28	□□□□□ -1.72
TPM2	YIL138C	KRI1	P42846	591 aa	Known RBP	4.28	□□□□□ -1.72
TPM2	YIL138C	KTR4	P38131	464 aa		4.27	□□□□□ -1.73
TPM2	YIL138C	KAR4	P25583	335 aa		4.26	□□□□□ -1.73
TPM2	YIL138C	SAH1	P39954	449 aa	Known RBP	4.26	□□□□□ -1.73
TPM2	YIL138C	SRP1	Q02821	542 aa	Known RBP	4.26	□□□□□ -1.73
TPM2	YIL138C	YLR225C	Q05948	407 aa	Known RBP	4.26	□□□□□ -1.73
TPM2	YIL138C	LAS17	Q12446	633 aa		4.26	□□□□□ -1.73
TPM2	YIL138C	OYE2	Q03558	400 aa	Known RBP	4.25	□□□□□ -1.73
TPM2	YIL138C	YOL073C	Q08232	322 aa		4.25	□□□□□ -1.73
TPM2	YIL138C	STU2	P46675	888 aa		4.24	□□□□□ -1.73
TPM2	YIL138C	BUL1	P48524	976 aa		4.24	□□□□□ -1.73
TPM2	YIL138C	OMS1	Q06668	471 aa		4.24	□□□□□ -1.73
TPM2	YIL138C	YLR040C	Q07988	224 aa		4.24	□□□□□ -1.73
TPM2	YIL138C	TRP4	P07285	380 aa	Predicted RBP	4.23	□□□□□ -1.73
TPM2	YIL138C	CDC12	P32468	407 aa	Known RBP	4.23	□□□□□ -1.73
TPM2	YIL138C	SUL1	P38359	859 aa		4.23	□□□□□ -1.73
TPM2	YIL138C	YGR053C	P53234	283 aa		4.23	□□□□□ -1.73
TPM2	YIL138C	UPC2	Q12151	913 aa		4.23	□□□□□ -1.73
TPM2	YIL138C	CAD1	P24813	409 aa	Known RBP	4.22	□□□□□ -1.73
TPM2	YIL138C	ERG4	P25340	473 aa		4.22	□□□□□ -1.73
TPM2	YIL138C	GYP7	P48365	746 aa		4.22	□□□□□ -1.73
TPM2	YIL138C	TIM44	Q01852	431 aa		4.22	□□□□□ -1.73
TPM2	YIL138C	YML020W	Q03722	664 aa		4.22	□□□□□ -1.73
TPM2	YIL138C	WHI4	Q07655	649 aa	Known RBP	4.22	□□□□□ -1.73
TPM2	YIL138C	NOP8	Q08287	484 aa	Predicted RBP	4.22	□□□□□ -1.73
TPM2	YIL138C	MCH5	Q08777	521 aa		4.22	□□□□□ -1.73
TPM2	YIL138C	SED4	P25365	1065 aa		4.21	□□□□□ -1.74
TPM2	YIL138C	YKR078W	P36158	585 aa	Known RBP	4.21	□□□□□ -1.74
TPM2	YIL138C	NPP2	P39997	493 aa		4.21	□□□□□ -1.74
TPM2	YIL138C	QRI1	P43123	477 aa	Known RBP	4.21	□□□□□ -1.74
TPM2	YIL138C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
TPM2	YIL138C	ACF2	Q12168	779 aa		4.21	□□□□□ -1.74
TPM2	YIL138C	SBA1	P28707	216 aa	Known RBP	4.2	□□□□□ -1.74
TPM2	YIL138C	RAI1	P53063	387 aa	Known RBP	4.2	□□□□□ -1.74
TPM2	YIL138C	SFB2	P53953	876 aa		4.2	□□□□□ -1.74
TPM2	YIL138C	RNT1	Q02555	471 aa		4.2	□□□□□ -1.74
TPM2	YIL138C	TMN2	Q04562	672 aa		4.2	□□□□□ -1.74
TPM2	YIL138C	AGP1	P25376	633 aa		4.19	□□□□□ -1.74
TPM2	YIL138C	STE14	P32584	239 aa		4.19	□□□□□ -1.74
TPM2	YIL138C	ABD1	P32783	436 aa	Predicted RBP	4.19	□□□□□ -1.74
TPM2	YIL138C	YER158C	P40095	573 aa		4.19	□□□□□ -1.74
TPM2	YIL138C	YPR196W	Q06595	470 aa		4.19	□□□□□ -1.74
TPM2	YIL138C	ATF1	P40353	525 aa		4.18	□□□□□ -1.74
TPM2	YIL138C	STB4	P50104	949 aa		4.18	□□□□□ -1.74
TPM2	YIL138C	DUS3	Q06053	668 aa	Known RBP	4.18	□□□□□ -1.74
TPM2	YIL138C	ESC2	Q06340	456 aa		4.18	□□□□□ -1.74
TPM2	YIL138C	PPR1	P07272	904 aa	Predicted RBP	4.17	□□□□□ -1.74
TPM2	YIL138C	NAP1	P25293	417 aa	Known RBP	4.17	□□□□□ -1.74
TPM2	YIL138C	YBR238C	P38330	731 aa	Known RBP	4.17	□□□□□ -1.74
TPM2	YIL138C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
TPM2	YIL138C	FAA4	P47912	694 aa	Known RBP	4.17	□□□□□ -1.74
TPM2	YIL138C	GDE1	Q02979	1223 aa		4.17	□□□□□ -1.74
TPM2	YIL138C	YMR206W	Q03695	313 aa		4.17	□□□□□ -1.74
TPM2	YIL138C	IRC10	Q08118	586 aa		4.17	□□□□□ -1.74
TPM2	YIL138C	CDC48	P25694	835 aa	Known RBP	4.16	□□□□□ -1.74
TPM2	YIL138C	TSL1	P38427	1098 aa	Known RBP	4.16	□□□□□ -1.74
TPM2	YIL138C	MBP1	P39678	833 aa		4.16	□□□□□ -1.74
TPM2	YIL138C	ALG7	P07286	448 aa		4.15	□□□□□ -1.75
TPM2	YIL138C	CLN2	P20438	545 aa		4.15	□□□□□ -1.75
TPM2	YIL138C	YKE2	P52553	114 aa		4.15	□□□□□ -1.75
TPM2	YIL138C	VPS30	Q02948	557 aa		4.15	□□□□□ -1.75
TPM2	YIL138C	FAL1	Q12099	399 aa	Known RBP	4.15	□□□□□ -1.75
TPM2	YIL138C	NOT3	P06102	836 aa	Known RBP	4.14	□□□□□ -1.75
TPM2	YIL138C	ERG5	P54781	538 aa		4.14	□□□□□ -1.75
TPM2	YIL138C	LGE1	Q02796	332 aa	Known RBP	4.14	□□□□□ -1.75
TPM2	YIL138C	SHE9	Q04172	456 aa		4.14	□□□□□ -1.75
TPM2	YIL138C	BDF2	Q07442	638 aa		4.14	□□□□□ -1.75
TPM2	YIL138C	PPH3	P32345	308 aa		4.13	□□□□□ -1.75
TPM2	YIL138C	STE13	P33894	931 aa		4.13	□□□□□ -1.75
TPM2	YIL138C	CUE2	P36075	443 aa	Known RBP	4.13	□□□□□ -1.75
TPM2	YIL138C	SLU7	Q02775	382 aa	Known RBP	4.13	□□□□□ -1.75
TPM2	YIL138C	VPS16	Q03308	798 aa		4.13	□□□□□ -1.75
TPM2	YIL138C	PEX19	Q07418	342 aa		4.13	□□□□□ -1.75
TPM2	YIL138C	TRM13	Q12383	476 aa		4.13	□□□□□ -1.75
TPM2	YIL138C	ADE8	P04161	214 aa		4.12	□□□□□ -1.75
TPM2	YIL138C	FBP1	P09201	348 aa		4.12	□□□□□ -1.75
TPM2	YIL138C	SCT1	P32784	759 aa		4.12	□□□□□ -1.75
TPM2	YIL138C	MTH1	P35198	433 aa		4.12	□□□□□ -1.75
TPM2	YIL138C	DAS1	P47005	663 aa		4.12	□□□□□ -1.75
TPM2	YIL138C	TPO2	P53283	614 aa		4.12	□□□□□ -1.75
TPM2	YIL138C	YDR306C	Q06640	478 aa		4.12	□□□□□ -1.75
TPM2	YIL138C	HBT1	Q07653	1046 aa	Known RBP	4.12	□□□□□ -1.75
TPM2	YIL138C	MET3	P08536	511 aa		4.11	□□□□□ -1.75
TPM2	YIL138C	SEC21	P32074	935 aa	Known RBP	4.11	□□□□□ -1.75
TPM2	YIL138C	CTF13	P35203	478 aa		4.11	□□□□□ -1.75
TPM2	YIL138C	VBA5	P36172	582 aa		4.11	□□□□□ -1.75
TPM2	YIL138C	SDP1	P40479	209 aa		4.11	□□□□□ -1.75
TPM2	YIL138C	MUK1	Q02866	612 aa		4.11	□□□□□ -1.75
TPM2	YIL138C	TRM11	Q12463	433 aa		4.11	□□□□□ -1.75
TPM2	YIL138C	MRP8	P35719	219 aa		4.1	□□□□□ -1.75
TPM2	YIL138C	SPC42	P36094	363 aa		4.1	□□□□□ -1.75
TPM2	YIL138C	SIT1	P39980	628 aa		4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 71.4 ms