RNA–Protein interactions for RNA: YDL091C

UBX3, Transcript of Subunit of the DSC ubiquitin ligase complex, yeast

Gene UBX3, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX3	YDL091C	GCV2	P49095	1034 aa		4.72	□□□□□ -1.65
UBX3	YDL091C	YGR012W	P53206	393 aa		4.72	□□□□□ -1.65
UBX3	YDL091C	YLR224W	Q05947	369 aa		4.72	□□□□□ -1.65
UBX3	YDL091C	YDR306C	Q06640	478 aa		4.72	□□□□□ -1.65
UBX3	YDL091C	RPP2A	P05319	106 aa	Known RBP	4.71	□□□□□ -1.66
UBX3	YDL091C	HSF1	P10961	833 aa		4.71	□□□□□ -1.66
UBX3	YDL091C	ENA1	P13587	1091 aa		4.71	□□□□□ -1.66
UBX3	YDL091C	PRP9	P19736	530 aa	Known RBP	4.71	□□□□□ -1.66
UBX3	YDL091C	YBR238C	P38330	731 aa	Known RBP	4.71	□□□□□ -1.66
UBX3	YDL091C	TSL1	P38427	1098 aa	Known RBP	4.71	□□□□□ -1.66
UBX3	YDL091C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.71	□□□□□ -1.66	not detected
UBX3	YDL091C	SFB2	P53953	876 aa		4.71	□□□□□ -1.66
UBX3	YDL091C	ENA2	Q01896	1091 aa		4.71	□□□□□ -1.66
UBX3	YDL091C	ENA5	Q12691	1091 aa		4.71	□□□□□ -1.66
UBX3	YDL091C	HIS5	P07172	385 aa		4.7	□□□□□ -1.66
UBX3	YDL091C	PPH3	P32345	308 aa		4.7	□□□□□ -1.66
UBX3	YDL091C	SRP101	P32916	621 aa		4.7	□□□□□ -1.66
UBX3	YDL091C	AFR1	P33304	620 aa		4.7	□□□□□ -1.66
UBX3	YDL091C	YER158C	P40095	573 aa		4.7	□□□□□ -1.66
UBX3	YDL091C	CHA4	P43634	648 aa		4.7	□□□□□ -1.66
UBX3	YDL091C	YKE2	P52553	114 aa		4.7	□□□□□ -1.66
UBX3	YDL091C	NAN1	Q02931	896 aa	Known RBP	4.7	□□□□□ -1.66
UBX3	YDL091C	FMP25	Q08023	583 aa		4.7	□□□□□ -1.66
UBX3	YDL091C	ADE8	P04161	214 aa		4.69	□□□□□ -1.66
UBX3	YDL091C	SPE1	P08432	466 aa		4.69	□□□□□ -1.66
UBX3	YDL091C	NPP1	P25353	742 aa		4.69	□□□□□ -1.66
UBX3	YDL091C	AAR2	P32357	355 aa	Predicted RBP	4.69	□□□□□ -1.66
UBX3	YDL091C	HBS1	P32769	611 aa	Known RBP	4.69	□□□□□ -1.66
UBX3	YDL091C	MNN10	P50108	393 aa	Known RBP	4.69	□□□□□ -1.66
UBX3	YDL091C	UTP8	P53276	713 aa	Known RBP	4.69	□□□□□ -1.66
UBX3	YDL091C	TPO2	P53283	614 aa		4.69	□□□□□ -1.66
UBX3	YDL091C	TUB2	P02557	457 aa	Known RBP	4.68	□□□□□ -1.66
UBX3	YDL091C	CDC48	P25694	835 aa	Known RBP	4.68	□□□□□ -1.66
UBX3	YDL091C	SCT1	P32784	759 aa		4.68	□□□□□ -1.66
UBX3	YDL091C	PSP2	P50109	593 aa	Known RBP	4.68	□□□□□ -1.66
UBX3	YDL091C	BUL2	Q03758	920 aa	Known RBP	4.68	□□□□□ -1.66
UBX3	YDL091C	TMA10	Q06177	86 aa		4.68	□□□□□ -1.66
UBX3	YDL091C	RPL8B	P29453	256 aa	Known RBP	4.67	□□□□□ -1.66
UBX3	YDL091C	ATG19	P35193	415 aa		4.67	□□□□□ -1.66
UBX3	YDL091C	CCC2	P38995	1004 aa		4.67	□□□□□ -1.66
UBX3	YDL091C	PLB1	P39105	664 aa		4.67	□□□□□ -1.66
UBX3	YDL091C	URM1	P40554	99 aa	Predicted RBP	4.67	□□□□□ -1.66
UBX3	YDL091C	YJL049W	P47048	450 aa		4.67	□□□□□ -1.66
UBX3	YDL091C	SPO75	Q07798	868 aa		4.67	□□□□□ -1.66
UBX3	YDL091C	YRO2	P38079	344 aa		4.66	□□□□□ -1.66
UBX3	YDL091C	MCM6	P53091	1017 aa	Known RBP	4.66	□□□□□ -1.66
UBX3	YDL091C	YPR196W	Q06595	470 aa		4.66	□□□□□ -1.66
UBX3	YDL091C	TAD3	Q9URQ3	322 aa		4.66	□□□□□ -1.66
UBX3	YDL091C	RAD4	P14736	754 aa		4.65	□□□□□ -1.66
UBX3	YDL091C	CDC11	P32458	415 aa		4.65	□□□□□ -1.66
UBX3	YDL091C	DCG1	P32460	244 aa		4.65	□□□□□ -1.66
UBX3	YDL091C	ALR2	P43553	858 aa		4.65	□□□□□ -1.66
UBX3	YDL091C	ERP6	P53198	216 aa		4.65	□□□□□ -1.66
UBX3	YDL091C	LCD1	Q04377	747 aa		4.65	□□□□□ -1.66
UBX3	YDL091C	PNS1	Q12412	539 aa		4.65	□□□□□ -1.66
UBX3	YDL091C	CCM1	P48237	864 aa	Predicted RBP	4.65	□□□□□ -1.67
UBX3	YDL091C	EXG2	P52911	562 aa		4.65	□□□□□ -1.67
UBX3	YDL091C	RAI1	P53063	387 aa	Known RBP	4.65	□□□□□ -1.67
UBX3	YDL091C	NCS6	P53088	359 aa		4.65	□□□□□ -1.67
UBX3	YDL091C	EAF1	Q06337	982 aa		4.65	□□□□□ -1.67
UBX3	YDL091C	KCS1	Q12494	1050 aa		4.65	□□□□□ -1.67
UBX3	YDL091C	PMA1	P05030	918 aa	Known RBP	4.64	□□□□□ -1.67
UBX3	YDL091C	HCM1	P25364	564 aa		4.64	□□□□□ -1.67
UBX3	YDL091C	TOK1	P40310	691 aa		4.64	□□□□□ -1.67
UBX3	YDL091C	IOC3	P43596	787 aa		4.64	□□□□□ -1.67
UBX3	YDL091C	UBX5	Q06682	500 aa		4.64	□□□□□ -1.67
UBX3	YDL091C	OSH2	Q12451	1283 aa		4.64	□□□□□ -1.67
UBX3	YDL091C	HBN1	Q96VH4	193 aa		4.64	□□□□□ -1.67
UBX3	YDL091C	NOT3	P06102	836 aa	Known RBP	4.63	□□□□□ -1.67
UBX3	YDL091C	ERT1	P38140	529 aa		4.63	□□□□□ -1.67
UBX3	YDL091C	WHI4	Q07655	649 aa	Known RBP	4.63	□□□□□ -1.67
UBX3	YDL091C	NTO1	Q12311	748 aa		4.63	□□□□□ -1.67
UBX3	YDL091C	HSP60	P19882	572 aa	Known RBP	4.62	□□□□□ -1.67
UBX3	YDL091C	REC104	P33323	182 aa		4.62	□□□□□ -1.67
UBX3	YDL091C	TRM2	P33753	639 aa		4.62	□□□□□ -1.67
UBX3	YDL091C	STE13	P33894	931 aa		4.62	□□□□□ -1.67
UBX3	YDL091C	PET10	P36139	283 aa		4.62	□□□□□ -1.67
UBX3	YDL091C	YHR020W	P38708	688 aa	Known RBP	4.62	□□□□□ -1.67
UBX3	YDL091C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
UBX3	YDL091C	UPC2	Q12151	913 aa		4.62	□□□□□ -1.67
UBX3	YDL091C	YPR071W	Q12346	211 aa		4.62	□□□□□ -1.67
UBX3	YDL091C	NPC2	Q12408	173 aa		4.62	□□□□□ -1.67
UBX3	YDL091C	CIT1	P00890	479 aa		4.61	□□□□□ -1.67
UBX3	YDL091C	FBP1	P09201	348 aa		4.61	□□□□□ -1.67
UBX3	YDL091C	ARE1	P25628	610 aa		4.61	□□□□□ -1.67
UBX3	YDL091C	STE14	P32584	239 aa		4.61	□□□□□ -1.67
UBX3	YDL091C	YBR284W	P38150	797 aa		4.61	□□□□□ -1.67
UBX3	YDL091C	TIM54	P47045	478 aa		4.61	□□□□□ -1.67
UBX3	YDL091C	PHO23	P50947	330 aa		4.61	□□□□□ -1.67
UBX3	YDL091C	GUP2	Q08929	609 aa		4.61	□□□□□ -1.67
UBX3	YDL091C	MSD1	P15179	658 aa	Known RBP	4.6	□□□□□ -1.67
UBX3	YDL091C	PMI40	P29952	429 aa	Known RBP	4.6	□□□□□ -1.67
UBX3	YDL091C	NNF1	P47149	201 aa		4.6	□□□□□ -1.67
UBX3	YDL091C	TAF8	Q03750	510 aa		4.6	□□□□□ -1.67
UBX3	YDL091C	ENB1	Q08299	606 aa		4.6	□□□□□ -1.67
UBX3	YDL091C	FLC1	Q08967	793 aa		4.6	□□□□□ -1.67
UBX3	YDL091C	DEF1	P35732	738 aa	Known RBP	4.59	□□□□□ -1.67
UBX3	YDL091C	YGR125W	P53273	1036 aa		4.59	□□□□□ -1.67
UBX3	YDL091C	VPS30	Q02948	557 aa		4.59	□□□□□ -1.67
UBX3	YDL091C	URN1	Q06525	465 aa	Known RBP	4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 90.5 ms