RNA–Protein interactions for RNA: YDL228C

YDL228C, Transcript of Dubious open reading frame, yeast

Gene YDL228C, Length 642 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDL228C	YDL228C	SWI5	P08153	709 aa		4.75	□□□□□ -1.65
YDL228C	YDL228C	PEP3	P27801	918 aa		4.75	□□□□□ -1.65
YDL228C	YDL228C	RPL8B	P29453	256 aa	Known RBP	4.75	□□□□□ -1.65
YDL228C	YDL228C	MXR1	P40029	184 aa		4.75	□□□□□ -1.65
YDL228C	YDL228C	YJR098C	P47139	656 aa		4.75	□□□□□ -1.65
YDL228C	YDL228C	ROM1	P53046	1155 aa		4.75	□□□□□ -1.65
YDL228C	YDL228C	YGL039W	P53183	348 aa	Known RBP	4.75	□□□□□ -1.65
YDL228C	YDL228C	VPS62	P53285	467 aa		4.75	□□□□□ -1.65
YDL228C	YDL228C	BUL2	Q03758	920 aa	Known RBP	4.75	□□□□□ -1.65
YDL228C	YDL228C	SPH1	Q06160	661 aa		4.75	□□□□□ -1.65
YDL228C	YDL228C	ICL2	Q12031	575 aa		4.75	□□□□□ -1.65
YDL228C	YDL228C	YUR1	P26725	428 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	SRP40	P32583	406 aa	Predicted RBP	4.74	□□□□□ -1.65
YDL228C	YDL228C	DBP7	P36120	742 aa	Known RBP	4.74	□□□□□ -1.65
YDL228C	YDL228C	VPS45	P38932	577 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	ATG3	P40344	310 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	YGR125W	P53273	1036 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	MDM1	Q01846	1127 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	SLD5	Q03406	294 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	OPT2	Q06593	877 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	MET7	Q08645	548 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	ERP3	Q12403	225 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	TY1A-DR3	Q12441	440 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	YOR131C	Q12486	218 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	YOR111W	Q99210	232 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	YPR117W	Q06116	2489 aa		4.74	□□□□□ -1.65
YDL228C	YDL228C	TRL1	P09880	827 aa	Known RBP	4.73	□□□□□ -1.65
YDL228C	YDL228C	RPS6A	P0CX37	236 aa	Known RBP	4.73	□□□□□ -1.65
YDL228C	YDL228C	RPS6B	P0CX38	236 aa	Predicted RBP	4.73	□□□□□ -1.65
YDL228C	YDL228C	PHO87	P25360	923 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	RGT1	P32862	1170 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	MCR1	P36060	302 aa	Known RBP	4.73	□□□□□ -1.65
YDL228C	YDL228C	MAL31	P38156	614 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	UBX7	P38349	436 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	PES4	P39684	611 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	AIM21	P40563	679 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	NUP85	P46673	744 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	YMR321C	Q04898	105 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	EST2	Q06163	884 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	DSE3	Q08729	430 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	MDM20	Q12387	796 aa	Known RBP	4.73	□□□□□ -1.65
YDL228C	YDL228C	ECM29	P38737	1868 aa		4.73	□□□□□ -1.65
YDL228C	YDL228C	CDC19	P00549	500 aa	Known RBP	4.72	□□□□□ -1.65
YDL228C	YDL228C	YKR018C	P36114	725 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	UIP5	P36137	443 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	SHM1	P37292	490 aa	Predicted RBP	4.72	□□□□□ -1.65
YDL228C	YDL228C	LDH1	P38139	375 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	KSP1	P38691	1029 aa	Known RBP	4.72	□□□□□ -1.65
YDL228C	YDL228C	AKR1	P39010	764 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	VID28	P40547	921 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	YJR107W	P47145	328 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	FMS1	P50264	508 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	ASE1	P50275	885 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	YPQ2	Q06328	317 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	ESF1	Q06344	628 aa	Known RBP	4.72	□□□□□ -1.65
YDL228C	YDL228C	GUD1	Q07729	489 aa		4.72	□□□□□ -1.65
YDL228C	YDL228C	CLF1	Q12309	687 aa	Predicted RBP	4.72	□□□□□ -1.65
YDL228C	YDL228C	MET6	P05694	767 aa	Known RBP	4.71	□□□□□ -1.66
YDL228C	YDL228C	RNR3	P21672	869 aa	Known RBP	4.71	□□□□□ -1.66
YDL228C	YDL228C	TKL1	P23254	680 aa	Known RBP	4.71	□□□□□ -1.66
YDL228C	YDL228C	SUV3	P32580	737 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	UGA4	P32837	571 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	KTR2	P33550	425 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	REG2	P38232	338 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	TOM71	P38825	639 aa	Known RBP	4.71	□□□□□ -1.66
YDL228C	YDL228C	SSN3	P39073	555 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	SKP2	P42843	763 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	YNL165W	P53891	406 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	YAF9	P53930	226 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	YDR444W	Q04093	687 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	LCB5	Q06147	687 aa	Known RBP	4.71	□□□□□ -1.66
YDL228C	YDL228C	ECM30	Q06673	1274 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	ISA1	Q07821	250 aa	Predicted RBP	4.71	□□□□□ -1.66
YDL228C	YDL228C	MSC6	Q08818	692 aa	Known RBP	4.71	□□□□□ -1.66
YDL228C	YDL228C	RKM4	Q12504	494 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	TSC13	Q99190	310 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	MYO1	P08964	1928 aa		4.71	□□□□□ -1.66
YDL228C	YDL228C	POX1	P13711	748 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.7	□□□□□ -1.66	RIP-Chip
YDL228C	YDL228C	GAR1	P28007	205 aa	Known RBP	4.7	□□□□□ -1.66
YDL228C	YDL228C	SIS2	P36024	562 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	PAN5	P38787	379 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	NOC2	P39744	710 aa	Known RBP	4.7	□□□□□ -1.66
YDL228C	YDL228C	PCI8	P40512	444 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	EPL1	P43572	832 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	LIF1	P53150	421 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	LSB1	P53281	241 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	PTA1	Q01329	785 aa	Predicted RBP	4.7	□□□□□ -1.66
YDL228C	YDL228C	YPL034W	Q03083	165 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	WHI4	Q07655	649 aa	Known RBP	4.7	□□□□□ -1.66
YDL228C	YDL228C	TRM11	Q12463	433 aa		4.7	□□□□□ -1.66
YDL228C	YDL228C	CYT1	P07143	309 aa		4.69	□□□□□ -1.66
YDL228C	YDL228C	RPL8A	P17076	256 aa	Known RBP	4.69	□□□□□ -1.66
YDL228C	YDL228C	TPM1	P17536	199 aa	Known RBP	4.69	□□□□□ -1.66
YDL228C	YDL228C	SWI4	P25302	1093 aa	Known RBP	4.69	□□□□□ -1.66
YDL228C	YDL228C	MCM4	P30665	933 aa	Known RBP	4.69	□□□□□ -1.66
YDL228C	YDL228C	TFC4	P33339	1025 aa		4.69	□□□□□ -1.66
YDL228C	YDL228C	TBS1	P38114	1094 aa		4.69	□□□□□ -1.66
YDL228C	YDL228C	FLR1	P38124	548 aa		4.69	□□□□□ -1.66
YDL228C	YDL228C	FIR1	P40020	876 aa		4.69	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 28.5 ms