RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C TIF1P10081 395 aaKnown RBP5.48□□□□□ -1.53
NUP116YMR047C RIT1P23796 513 aa5.48□□□□□ -1.53
NUP116YMR047C PRO3P32263 286 aaKnown RBP5.48□□□□□ -1.53
NUP116YMR047C SSP1P38871 571 aa5.48□□□□□ -1.53
NUP116YMR047C SKY1Q03656 742 aa5.48□□□□□ -1.53
NUP116YMR047C RCF1Q03713 159 aa5.48□□□□□ -1.53
NUP116YMR047C NOP58Q12499 511 aaKnown RBP5.48□□□□□ -1.53
NUP116YMR047C CBP3P21560 335 aa5.48□□□□□ -1.53
NUP116YMR047C TAN1P53072 289 aaPredicted RBP5.48□□□□□ -1.53
NUP116YMR047C NFI1Q12216 726 aa5.48□□□□□ -1.53
NUP116YMR047C BIO2P32451 375 aa5.48□□□□□ -1.53
NUP116YMR047C NOC2P39744 710 aaKnown RBP5.48□□□□□ -1.53
NUP116YMR047C OYE2Q03558 400 aaKnown RBP5.48□□□□□ -1.53
NUP116YMR047C KRS1P15180 591 aaKnown RBP5.47□□□□□ -1.53
NUP116YMR047C BMH2P34730 273 aaKnown RBP5.47□□□□□ -1.53
NUP116YMR047C RSC1P53236 928 aa5.47□□□□□ -1.53
NUP116YMR047C YVH1Q02256 364 aaKnown RBP5.47□□□□□ -1.53
NUP116YMR047C EST2Q06163 884 aa5.47□□□□□ -1.53
NUP116YMR047C TFC6Q06339 672 aa5.47□□□□□ -1.53
NUP116YMR047C CEX1Q12453 761 aa5.47□□□□□ -1.53
NUP116YMR047C SAM2P19358 384 aaKnown RBP5.47□□□□□ -1.53
NUP116YMR047C YUR1P26725 428 aa5.47□□□□□ -1.53
NUP116YMR047C AIM9P40053 627 aaKnown RBP5.47□□□□□ -1.53
NUP116YMR047C DAK1P54838 584 aaKnown RBP5.47□□□□□ -1.53
NUP116YMR047C GDE1Q02979 1223 aa5.47□□□□□ -1.53
NUP116YMR047C PDC1P06169 563 aaKnown RBP5.46□□□□□ -1.53
NUP116YMR047C SIT1P39980 628 aa5.46□□□□□ -1.53
NUP116YMR047C MDR1P53258 950 aa5.46□□□□□ -1.53
NUP116YMR047C YMR321CQ04898 105 aa5.46□□□□□ -1.53
NUP116YMR047C MSC6Q08818 692 aaKnown RBP5.46□□□□□ -1.53
NUP116YMR047C PET111P08468 800 aa5.46□□□□□ -1.54
NUP116YMR047C FUB1P25659 250 aa5.46□□□□□ -1.54
NUP116YMR047C NAB3P38996 802 aaKnown RBP RIP-Chip data5.46□□□□□ -1.54not detected
NUP116YMR047C ROG3P43602 733 aa5.46□□□□□ -1.54
NUP116YMR047C CNM67P53865 581 aaKnown RBP5.46□□□□□ -1.54
NUP116YMR047C RTP1Q12751 981 aa5.46□□□□□ -1.54
NUP116YMR047C VAS1P07806 1104 aaKnown RBP5.46□□□□□ -1.54
NUP116YMR047C MATALPHA2P0CY08 210 aa5.46□□□□□ -1.54
NUP116YMR047C HMLALPHA2P0CY09 210 aa5.46□□□□□ -1.54
NUP116YMR047C DBP1P24784 617 aaKnown RBP5.46□□□□□ -1.54
NUP116YMR047C BFA1P47113 574 aa5.46□□□□□ -1.54
NUP116YMR047C COG8Q04632 607 aa5.46□□□□□ -1.54
NUP116YMR047C PHR1P05066 565 aaKnown RBP RIP-Chip data5.45□□□□□ -1.54not detected
NUP116YMR047C YAP1801P38856 637 aa5.45□□□□□ -1.54
NUP116YMR047C HOS4P40480 1083 aa5.45□□□□□ -1.54
NUP116YMR047C SKP2P42843 763 aa5.45□□□□□ -1.54
NUP116YMR047C YGL138CP53122 345 aa5.45□□□□□ -1.54
NUP116YMR047C NAF1P53919 492 aaKnown RBP5.45□□□□□ -1.54
NUP116YMR047C PHM6Q05637 104 aa5.45□□□□□ -1.54
NUP116YMR047C YKR023WP36119 530 aaKnown RBP5.45□□□□□ -1.54
NUP116YMR047C TVP38P36164 337 aa5.45□□□□□ -1.54
NUP116YMR047C TAF1P46677 1066 aa5.45□□□□□ -1.54
NUP116YMR047C FOL2P51601 243 aaKnown RBP5.45□□□□□ -1.54
NUP116YMR047C RET3P53600 189 aa5.45□□□□□ -1.54
NUP116YMR047C DUS3Q06053 668 aaKnown RBP5.45□□□□□ -1.54
NUP116YMR047C ESF1Q06344 628 aaKnown RBP5.45□□□□□ -1.54
NUP116YMR047C SLP1Q12232 587 aa5.45□□□□□ -1.54
NUP116YMR047C ROX1P25042 368 aa5.45□□□□□ -1.54
NUP116YMR047C CDC11P32458 415 aa5.45□□□□□ -1.54
NUP116YMR047C SAF1P38352 637 aa5.45□□□□□ -1.54
NUP116YMR047C STB5P38699 743 aa5.45□□□□□ -1.54
NUP116YMR047C UTP4Q06679 776 aaKnown RBP5.45□□□□□ -1.54
NUP116YMR047C PSK2Q08217 1101 aa5.45□□□□□ -1.54
NUP116YMR047C SRP40P32583 406 aaPredicted RBP5.44□□□□□ -1.54
NUP116YMR047C FMS1P50264 508 aa5.44□□□□□ -1.54
NUP116YMR047C VID30P53076 958 aa5.44□□□□□ -1.54
NUP116YMR047C DMA2P53924 522 aa5.44□□□□□ -1.54
NUP116YMR047C MAK11P20484 414 aaKnown RBP5.44□□□□□ -1.54
NUP116YMR047C PAM1P37304 830 aaKnown RBP5.44□□□□□ -1.54
NUP116YMR047C GUA1P38625 525 aaKnown RBP5.44□□□□□ -1.54
NUP116YMR047C SLD5Q03406 294 aa5.44□□□□□ -1.54
NUP116YMR047C FUS2Q05670 677 aa5.44□□□□□ -1.54
NUP116YMR047C WHI5Q12416 295 aa5.44□□□□□ -1.54
NUP116YMR047C SAM1P10659 382 aaKnown RBP5.43□□□□□ -1.54
NUP116YMR047C KIN82P25341 720 aa5.43□□□□□ -1.54
NUP116YMR047C DUR3P33413 735 aa5.43□□□□□ -1.54
NUP116YMR047C YEL025CP39991 1188 aa5.43□□□□□ -1.54
NUP116YMR047C CSM2P40465 213 aa5.43□□□□□ -1.54
NUP116YMR047C OSW7P43611 510 aa5.43□□□□□ -1.54
NUP116YMR047C JJJ3P47138 172 aa5.43□□□□□ -1.54
NUP116YMR047C BRE5P53741 515 aaKnown RBP5.43□□□□□ -1.54
NUP116YMR047C YLR407WQ06070 228 aa5.43□□□□□ -1.54
NUP116YMR047C WHI4Q07655 649 aaKnown RBP5.43□□□□□ -1.54
NUP116YMR047C HFI1Q12060 488 aa5.43□□□□□ -1.54
NUP116YMR047C YDR524C-BQ3E6R4 66 aa5.43□□□□□ -1.54
NUP116YMR047C PGK1P00560 416 aaKnown RBP5.43□□□□□ -1.54
NUP116YMR047C RPL8AP17076 256 aaKnown RBP5.43□□□□□ -1.54
NUP116YMR047C FBP26P32604 452 aa5.43□□□□□ -1.54
NUP116YMR047C YHL017WP38745 532 aa5.43□□□□□ -1.54
NUP116YMR047C BUL2Q03758 920 aaKnown RBP5.43□□□□□ -1.54
NUP116YMR047C GCD6P32501 712 aaKnown RBP5.43□□□□□ -1.54
NUP116YMR047C REG2P38232 338 aa5.43□□□□□ -1.54
NUP116YMR047C MFM1Q02783 413 aa5.43□□□□□ -1.54
NUP116YMR047C PWP2P25635 923 aaKnown RBP5.42□□□□□ -1.54
NUP116YMR047C RXT2P38255 430 aa5.42□□□□□ -1.54
NUP116YMR047C YNR014WP53719 212 aa5.42□□□□□ -1.54
NUP116YMR047C ERV41Q04651 352 aa5.42□□□□□ -1.54
NUP116YMR047C CUR1Q06469 252 aa5.42□□□□□ -1.54
NUP116YMR047C RRP9Q06506 573 aaKnown RBP5.42□□□□□ -1.54
NUP116YMR047C IDI1P15496 288 aa5.42□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 34.1 ms