RNA–Protein interactions for RNA: YFL044C

OTU1, Transcript of Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p, yeast

Gene OTU1, Length 906 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
OTU1	YFL044C	YNL011C	P53980	444 aa		4.76	□□□□□ -1.65
OTU1	YFL044C	DNM1	P54861	757 aa		4.76	□□□□□ -1.65
OTU1	YFL044C	CDC55	Q00362	526 aa		4.76	□□□□□ -1.65
OTU1	YFL044C	CUS1	Q02554	436 aa	Predicted RBP	4.76	□□□□□ -1.65
OTU1	YFL044C	VPS64	Q03944	604 aa		4.76	□□□□□ -1.65
OTU1	YFL044C	GAS5	Q08193	484 aa		4.76	□□□□□ -1.65
OTU1	YFL044C	YOL057W	Q08225	711 aa		4.76	□□□□□ -1.65
OTU1	YFL044C	BMS1	Q08965	1183 aa	Known RBP	4.76	□□□□□ -1.65
OTU1	YFL044C	CSR2	Q12734	1121 aa		4.76	□□□□□ -1.65
OTU1	YFL044C	COQ4	O13525	335 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	FBP1	P09201	348 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	STV1	P37296	890 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	NTA1	P40354	457 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	YIR007W	P40566	764 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	ROG3	P43602	733 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	SKP1	P52286	194 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	ZDS2	P54786	942 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	NAM8	Q00539	523 aa	Known RBP	4.75	□□□□□ -1.65
OTU1	YFL044C	MNL2	Q12205	849 aa		4.75	□□□□□ -1.65
OTU1	YFL044C	PHO4	P07270	312 aa	Known RBP	4.74	□□□□□ -1.65
OTU1	YFL044C	RPT1	P33299	467 aa	Known RBP	4.74	□□□□□ -1.65
OTU1	YFL044C	IRS4	P36115	615 aa	Known RBP	4.74	□□□□□ -1.65
OTU1	YFL044C	APE3	P37302	537 aa	Known RBP	4.74	□□□□□ -1.65
OTU1	YFL044C	RGD2	P43556	714 aa		4.74	□□□□□ -1.65
OTU1	YFL044C	SAM37	P50110	327 aa		4.74	□□□□□ -1.65
OTU1	YFL044C	BSC2	Q05611	235 aa		4.74	□□□□□ -1.65
OTU1	YFL044C	JIP5	Q06214	492 aa	Predicted RBP	4.74	□□□□□ -1.65
OTU1	YFL044C	DIT1	P21623	536 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	MET1	P36150	593 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	NCL1	P38205	684 aa	Known RBP	4.73	□□□□□ -1.65
OTU1	YFL044C	APM2	P38700	605 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	CIC1	P38779	376 aa	Known RBP	4.73	□□□□□ -1.65
OTU1	YFL044C	SPL2	P38839	148 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	AIM46	P38885	310 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	RTR1	P40084	226 aa	Predicted RBP	4.73	□□□□□ -1.65
OTU1	YFL044C	PSY2	P40164	858 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	YJR107W	P47145	328 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	GYP7	P48365	746 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	RSC4	Q02206	625 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	PKH1	Q03407	766 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	YMR265C	Q03508	461 aa	Known RBP	4.73	□□□□□ -1.65
OTU1	YFL044C	PRP42	Q03776	544 aa	Known RBP	4.73	□□□□□ -1.65
OTU1	YFL044C	TY1A-MR1	Q04215	440 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	RBA50	Q04418	439 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	SVF1	Q05515	481 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	FLO11	P08640	1367 aa		4.73	□□□□□ -1.65
OTU1	YFL044C	SWI1	P09547	1314 aa		4.72	□□□□□ -1.65
OTU1	YFL044C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
OTU1	YFL044C	DAK2	P43550	591 aa		4.72	□□□□□ -1.65
OTU1	YFL044C	NNF1	P47149	201 aa		4.72	□□□□□ -1.65
OTU1	YFL044C	RPT4	P53549	437 aa	Known RBP	4.72	□□□□□ -1.65
OTU1	YFL044C	FCP1	Q03254	732 aa		4.72	□□□□□ -1.65
OTU1	YFL044C	MAG2	Q06436	670 aa	Known RBP	4.72	□□□□□ -1.65
OTU1	YFL044C	YDR306C	Q06640	478 aa		4.72	□□□□□ -1.65
OTU1	YFL044C	NOC3	Q07896	663 aa	Predicted RBP	4.72	□□□□□ -1.65
OTU1	YFL044C	OXR1	Q08952	273 aa		4.72	□□□□□ -1.65
OTU1	YFL044C	CBP1	P07252	654 aa		4.71	□□□□□ -1.66
OTU1	YFL044C	VPS35	P34110	944 aa		4.71	□□□□□ -1.66
OTU1	YFL044C	ACO2	P39533	789 aa		4.71	□□□□□ -1.66
OTU1	YFL044C	MTC3	P53077	123 aa		4.71	□□□□□ -1.66
OTU1	YFL044C	ITC1	P53125	1264 aa		4.71	□□□□□ -1.66
OTU1	YFL044C	CUZ1	P53899	274 aa		4.71	□□□□□ -1.66
OTU1	YFL044C	KRE33	P53914	1056 aa	Known RBP	4.71	□□□□□ -1.66
OTU1	YFL044C	MTC5	Q03897	1148 aa		4.71	□□□□□ -1.66
OTU1	YFL044C	ACK1	Q07622	623 aa	Predicted RBP	4.71	□□□□□ -1.66
OTU1	YFL044C	PSF3	Q12146	194 aa		4.71	□□□□□ -1.66
OTU1	YFL044C	FPS1	P23900	669 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	MCM2	P29469	868 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	MGM1	P32266	881 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	YHL008C	P38750	627 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	YIL165C	P40446	119 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	NIT1	P40447	199 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	FYV10	P40492	516 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	YNR040W	P53736	256 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	HEH2	Q03281	663 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	EMG1	Q06287	252 aa	Known RBP	4.7	□□□□□ -1.66
OTU1	YFL044C	THI22	Q06490	572 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	THI3	Q07471	609 aa		4.7	□□□□□ -1.66
OTU1	YFL044C	BRN1	P38170	754 aa		4.69	□□□□□ -1.66
OTU1	YFL044C	ECM2	P38241	364 aa	Known RBP	4.69	□□□□□ -1.66
OTU1	YFL044C	CEM1	P39525	442 aa		4.69	□□□□□ -1.66
OTU1	YFL044C	NUG1	P40010	520 aa	Known RBP	4.69	□□□□□ -1.66
OTU1	YFL044C	ADE12	P80210	433 aa	Known RBP	4.69	□□□□□ -1.66
OTU1	YFL044C	RTT109	Q07794	436 aa		4.69	□□□□□ -1.66
OTU1	YFL044C	WRS1	Q12109	432 aa	Known RBP	4.69	□□□□□ -1.66
OTU1	YFL044C	YDR034W-B	Q6Q5X2	51 aa		4.69	□□□□□ -1.66
OTU1	YFL044C	CCP1	P00431	361 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	SUP35	P05453	685 aa	Known RBP	4.68	□□□□□ -1.66
OTU1	YFL044C	LCB1	P25045	558 aa	Known RBP	4.68	□□□□□ -1.66
OTU1	YFL044C	RPS7A	P26786	190 aa	Known RBP	4.68	□□□□□ -1.66
OTU1	YFL044C	NUP133	P36161	1157 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	GSM1	P42950	618 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	IRC4	Q03036	179 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	SRT1	Q03175	343 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	SPR28	Q04921	423 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	YLR225C	Q05948	407 aa	Known RBP	4.68	□□□□□ -1.66
OTU1	YFL044C	RSC2	Q06488	889 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	YDR461C-A	Q2V2P7	80 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	ADR1	P07248	1323 aa		4.68	□□□□□ -1.66
OTU1	YFL044C	MRP7	P12687	371 aa		4.67	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 39.2 ms