Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 AC016769.1-201ENST00000409132 1010 ntBASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 AC093787.1-201ENST00000450396 207 ntBASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 AL512625.2-201ENST00000417533 625 ntBASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USH1CQ9Y6N9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 AC134043.2-201ENST00000624206 2238 ntBASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 AC231657.2-201ENST00000624556 255 ntBASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 AC009053.2-201ENST00000563701 2365 ntBASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.69■□□□□ 0.58
USH1CQ9Y6N9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 KRT8P8-201ENST00000434750 1448 ntBASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 LSM12P1-201ENST00000411836 588 ntBASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.68■□□□□ 0.58
USH1CQ9Y6N9 AC007322.1-201ENST00000426983 750 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms