Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 MTMR9LP-203ENST00000426597 1545 ntBASIC19.63■□□□□ 0.73
USP3Q9Y6I4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 AC140113.3-201ENST00000605663 199 ntBASIC19.63■□□□□ 0.73
USP3Q9Y6I4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.63■□□□□ 0.73
USP3Q9Y6I4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 AC004408.2-201ENST00000623613 2777 ntBASIC19.62■□□□□ 0.73
USP3Q9Y6I4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 FAM8A6P-201ENST00000407496 1135 ntBASIC19.62■□□□□ 0.73
USP3Q9Y6I4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 AL590326.2-201ENST00000625139 305 ntBASIC19.62■□□□□ 0.73
USP3Q9Y6I4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP3Q9Y6I4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 KRT8P7-201ENST00000533003 1432 ntBASIC19.61■□□□□ 0.73
USP3Q9Y6I4 HOXB1-202ENST00000577092 1414 ntBASIC19.61■□□□□ 0.73
USP3Q9Y6I4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 AC022616.7-201ENST00000525383 220 ntBASIC19.61■□□□□ 0.73
USP3Q9Y6I4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 GCSHP2-201ENST00000560971 527 ntBASIC19.61■□□□□ 0.73
USP3Q9Y6I4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP3Q9Y6I4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.6■□□□□ 0.73
USP3Q9Y6I4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms