Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.49■□□□□ 0.23
LIME1Q9H400 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LIME1Q9H400 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.49■□□□□ 0.23
LIME1Q9H400 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIME1Q9H400 NEFHP1-201ENST00000412845 2629 ntBASIC16.49■□□□□ 0.23
LIME1Q9H400 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
LIME1Q9H400 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.48■□□□□ 0.23
LIME1Q9H400 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LIME1Q9H400 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LIME1Q9H400 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.48■□□□□ 0.23
LIME1Q9H400 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
LIME1Q9H400 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.48■□□□□ 0.23
LIME1Q9H400 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.48■□□□□ 0.23
LIME1Q9H400 AL160286.2-201ENST00000567150 934 ntBASIC16.48■□□□□ 0.23
LIME1Q9H400 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.48■□□□□ 0.23
LIME1Q9H400 HYMAI.1-201ENST00000620949 238 ntBASIC16.48■□□□□ 0.23
LIME1Q9H400 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.48■□□□□ 0.23
LIME1Q9H400 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
LIME1Q9H400 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC16.48■□□□□ 0.23
LIME1Q9H400 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.48■□□□□ 0.23
LIME1Q9H400 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIME1Q9H400 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 KRT8P8-201ENST00000434750 1448 ntBASIC16.47■□□□□ 0.23
LIME1Q9H400 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LIME1Q9H400 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LIME1Q9H400 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LIME1Q9H400 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
LIME1Q9H400 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.47■□□□□ 0.23
LIME1Q9H400 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.47■□□□□ 0.23
LIME1Q9H400 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.47■□□□□ 0.23
LIME1Q9H400 CA15P1-201ENST00000481698 905 ntBASIC16.47■□□□□ 0.23
LIME1Q9H400 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.47■□□□□ 0.23
LIME1Q9H400 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
LIME1Q9H400 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.47■□□□□ 0.23
LIME1Q9H400 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LIME1Q9H400 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.46■□□□□ 0.23
LIME1Q9H400 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 LINC01311-201ENST00000565162 1445 ntBASIC16.46■□□□□ 0.23
LIME1Q9H400 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
LIME1Q9H400 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
LIME1Q9H400 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LIME1Q9H400 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.46■□□□□ 0.23
LIME1Q9H400 GCSHP2-201ENST00000560971 527 ntBASIC16.46■□□□□ 0.23
LIME1Q9H400 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.46■□□□□ 0.23
LIME1Q9H400 AC092119.3-201ENST00000612618 583 ntBASIC16.46■□□□□ 0.23
LIME1Q9H400 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.46■□□□□ 0.23
LIME1Q9H400 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC16.46■□□□□ 0.23
LIME1Q9H400 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIME1Q9H400 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.46■□□□□ 0.23
LIME1Q9H400 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
LIME1Q9H400 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
LIME1Q9H400 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
LIME1Q9H400 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms