Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.62■□□□□ 0.73
CDX2Q99626 YBX1P5-201ENST00000509441 847 ntBASIC19.62■□□□□ 0.73
CDX2Q99626 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.62■□□□□ 0.73
CDX2Q99626 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.62■□□□□ 0.73
CDX2Q99626 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.62■□□□□ 0.73
CDX2Q99626 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.62■□□□□ 0.73
CDX2Q99626 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.62■□□□□ 0.73
CDX2Q99626 MIR4469-201ENST00000583919 79 ntBASIC19.62■□□□□ 0.73
CDX2Q99626 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.62■□□□□ 0.73
CDX2Q99626 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CDX2Q99626 AC008735.5-201ENST00000623544 497 ntBASIC19.62■□□□□ 0.73
CDX2Q99626 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDX2Q99626 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.62■□□□□ 0.73
CDX2Q99626 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX2Q99626 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDX2Q99626 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX2Q99626 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX2Q99626 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX2Q99626 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDX2Q99626 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.61■□□□□ 0.73
CDX2Q99626 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.61■□□□□ 0.73
CDX2Q99626 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.61■□□□□ 0.73
CDX2Q99626 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.61■□□□□ 0.73
CDX2Q99626 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.61■□□□□ 0.73
CDX2Q99626 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.61■□□□□ 0.73
CDX2Q99626 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
CDX2Q99626 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.61■□□□□ 0.73
CDX2Q99626 AC009533.2-201ENST00000543664 586 ntBASIC19.61■□□□□ 0.73
CDX2Q99626 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.61■□□□□ 0.73
CDX2Q99626 AC005336.2-201ENST00000593183 939 ntBASIC19.61■□□□□ 0.73
CDX2Q99626 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.61■□□□□ 0.73
CDX2Q99626 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDX2Q99626 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDX2Q99626 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.6■□□□□ 0.73
CDX2Q99626 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
CDX2Q99626 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
CDX2Q99626 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.6■□□□□ 0.73
CDX2Q99626 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CDX2Q99626 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.6■□□□□ 0.73
CDX2Q99626 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC19.6■□□□□ 0.73
CDX2Q99626 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.6■□□□□ 0.73
CDX2Q99626 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.6■□□□□ 0.73
CDX2Q99626 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.6■□□□□ 0.73
CDX2Q99626 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.6■□□□□ 0.73
CDX2Q99626 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CDX2Q99626 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.59■□□□□ 0.73
CDX2Q99626 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.59■□□□□ 0.73
CDX2Q99626 MCCD1P2-201ENST00000423228 335 ntBASIC19.59■□□□□ 0.73
CDX2Q99626 AC092474.2-201ENST00000424288 719 ntBASIC19.59■□□□□ 0.73
CDX2Q99626 CNN2P11-201ENST00000429351 262 ntBASIC19.59■□□□□ 0.73
CDX2Q99626 BCRP1-201ENST00000444246 691 ntBASIC19.59■□□□□ 0.73
CDX2Q99626 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.59■□□□□ 0.73
CDX2Q99626 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.59■□□□□ 0.73
CDX2Q99626 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.59■□□□□ 0.73
CDX2Q99626 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.59■□□□□ 0.73
CDX2Q99626 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.59■□□□□ 0.73
CDX2Q99626 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.59■□□□□ 0.73
CDX2Q99626 AL096865.1-201ENST00000606796 927 ntBASIC19.59■□□□□ 0.73
CDX2Q99626 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
CDX2Q99626 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.59■□□□□ 0.73
CDX2Q99626 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.59■□□□□ 0.73
CDX2Q99626 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.59■□□□□ 0.73
CDX2Q99626 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CDX2Q99626 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CDX2Q99626 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.58■□□□□ 0.73
CDX2Q99626 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CDX2Q99626 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CDX2Q99626 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
CDX2Q99626 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
CDX2Q99626 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CDX2Q99626 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CDX2Q99626 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.58■□□□□ 0.72
CDX2Q99626 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.58■□□□□ 0.72
CDX2Q99626 AC105339.3-201ENST00000560043 636 ntBASIC19.58■□□□□ 0.72
CDX2Q99626 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.58■□□□□ 0.72
CDX2Q99626 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.58■□□□□ 0.72
CDX2Q99626 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
CDX2Q99626 MIR3180-4-201ENST00000582223 153 ntBASIC19.58■□□□□ 0.72
CDX2Q99626 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CDX2Q99626 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CDX2Q99626 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.58■□□□□ 0.72
CDX2Q99626 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.58■□□□□ 0.72
CDX2Q99626 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CDX2Q99626 KRT89P-201ENST00000620027 1478 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms