Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 HLA-A-209ENST00000638375 975 ntBASIC19.26■□□□□ 0.67
SKA1Q96BD8 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 AL390961.4-201ENST00000623958 2535 ntBASIC19.25■□□□□ 0.67
SKA1Q96BD8 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.25■□□□□ 0.67
SKA1Q96BD8 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 AL512604.3-201ENST00000569583 964 ntBASIC19.25■□□□□ 0.67
SKA1Q96BD8 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 AC135050.7-201ENST00000624508 2218 ntBASIC19.25■□□□□ 0.67
SKA1Q96BD8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.25■□□□□ 0.67
SKA1Q96BD8 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 KRT8P8-201ENST00000434750 1448 ntBASIC19.25■□□□□ 0.67
SKA1Q96BD8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SKA1Q96BD8 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 MFAP1P1-201ENST00000442257 1255 ntBASIC19.24■□□□□ 0.67
SKA1Q96BD8 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 AL161938.1-201ENST00000569833 2180 ntBASIC19.24■□□□□ 0.67
SKA1Q96BD8 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SKA1Q96BD8 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SKA1Q96BD8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 AC096733.2-201ENST00000609937 1394 ntBASIC19.23■□□□□ 0.67
SKA1Q96BD8 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 AK4P3-201ENST00000418260 669 ntBASIC19.23■□□□□ 0.67
SKA1Q96BD8 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 AC010653.2-201ENST00000623505 997 ntBASIC19.23■□□□□ 0.67
SKA1Q96BD8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SKA1Q96BD8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SKA1Q96BD8 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms