Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 AC012306.2-201ENST00000609350 630 ntBASIC18.35■□□□□ 0.53
VRK3Q8IV63 AC010653.2-201ENST00000623505 997 ntBASIC18.35■□□□□ 0.53
VRK3Q8IV63 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.35■□□□□ 0.53
VRK3Q8IV63 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VRK3Q8IV63 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.35■□□□□ 0.53
VRK3Q8IV63 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 AC036111.1-201ENST00000533973 1582 ntBASIC18.34■□□□□ 0.53
VRK3Q8IV63 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 KRT8P45-201ENST00000414328 1447 ntBASIC18.34■□□□□ 0.53
VRK3Q8IV63 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 AC211429.1-201ENST00000415277 523 ntBASIC18.34■□□□□ 0.53
VRK3Q8IV63 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 AC128688.1-201ENST00000487626 519 ntBASIC18.34■□□□□ 0.53
VRK3Q8IV63 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.34■□□□□ 0.53
VRK3Q8IV63 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
VRK3Q8IV63 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK3Q8IV63 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.33■□□□□ 0.53
VRK3Q8IV63 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
VRK3Q8IV63 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VRK3Q8IV63 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK3Q8IV63 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VRK3Q8IV63 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
VRK3Q8IV63 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK3Q8IV63 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VRK3Q8IV63 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 CR769767.2-201ENST00000622735 460 ntBASIC18.33■□□□□ 0.52
VRK3Q8IV63 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VRK3Q8IV63 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
VRK3Q8IV63 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VRK3Q8IV63 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VRK3Q8IV63 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VRK3Q8IV63 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VRK3Q8IV63 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 KRT18P22-201ENST00000402024 1347 ntBASIC18.32■□□□□ 0.52
VRK3Q8IV63 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.32■□□□□ 0.52
VRK3Q8IV63 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 AC097493.4-201ENST00000641197 219 ntBASIC18.32■□□□□ 0.52
VRK3Q8IV63 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 AL138781.2-201ENST00000617896 1843 ntBASIC18.32■□□□□ 0.52
VRK3Q8IV63 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
VRK3Q8IV63 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
VRK3Q8IV63 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VRK3Q8IV63 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VRK3Q8IV63 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms