Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CDX1P47902 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 MIR4497-201ENST00000583208 89 ntBASIC15.32■□□□□ 0.04
CDX1P47902 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC15.32■□□□□ 0.04
CDX1P47902 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.32■□□□□ 0.04
CDX1P47902 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CDX1P47902 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 PHGDH-210ENST00000641115 1638 ntBASIC15.32■□□□□ 0.04
CDX1P47902 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDX1P47902 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.32■□□□□ 0.04
CDX1P47902 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15.32■□□□□ 0.04
CDX1P47902 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CDX1P47902 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC15.31■□□□□ 0.04
CDX1P47902 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
CDX1P47902 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CDX1P47902 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CDX1P47902 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 HTR7P1-202ENST00000624664 4411 ntBASIC15.31■□□□□ 0.04
CDX1P47902 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.31■□□□□ 0.04
CDX1P47902 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CDX1P47902 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.31■□□□□ 0.04
CDX1P47902 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.31■□□□□ 0.04
CDX1P47902 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CDX1P47902 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.31■□□□□ 0.04
CDX1P47902 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CDX1P47902 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.31■□□□□ 0.04
CDX1P47902 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CDX1P47902 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC15.31■□□□□ 0.04
CDX1P47902 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC15.31■□□□□ 0.04
CDX1P47902 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.31■□□□□ 0.04
CDX1P47902 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.31■□□□□ 0.04
CDX1P47902 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 AP006587.1-201ENST00000534129 1502 ntBASIC15.31■□□□□ 0.04
CDX1P47902 TFP1-202ENST00000475455 1573 ntBASIC15.31■□□□□ 0.04
CDX1P47902 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.31■□□□□ 0.04
CDX1P47902 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.31■□□□□ 0.04
CDX1P47902 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 CROCCP3-202ENST00000420820 1947 ntBASIC15.31■□□□□ 0.04
CDX1P47902 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC15.31■□□□□ 0.04
CDX1P47902 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDX1P47902 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC15.3■□□□□ 0.04
CDX1P47902 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CDX1P47902 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.3■□□□□ 0.04
CDX1P47902 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.3■□□□□ 0.04
CDX1P47902 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.3■□□□□ 0.04
CDX1P47902 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.3■□□□□ 0.04
CDX1P47902 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC15.3■□□□□ 0.04
CDX1P47902 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
CDX1P47902 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.3■□□□□ 0.04
CDX1P47902 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.3■□□□□ 0.04
CDX1P47902 AL049637.2-201ENST00000641778 930 ntBASIC15.3■□□□□ 0.04
CDX1P47902 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.3■□□□□ 0.04
CDX1P47902 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CDX1P47902 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDX1P47902 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms