Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 R3HDM2-215ENST00000634871 4092 ntTSL 5 BASIC14.99□□□□□ -0.014e-6■■□□□ 13.8
YBX3P16989 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.164e-6■■□□□ 13.8
YBX3P16989 R3HDM2-205ENST00000403821 3347 ntTSL 5 BASIC11.64□□□□□ -0.554e-6■■□□□ 13.8
YBX3P16989 R3HDM2-202ENST00000358907 3974 ntAPPRIS P2 TSL 5 BASIC10.58□□□□□ -0.714e-6■■□□□ 13.8
YBX3P16989 R3HDM2-207ENST00000441731 4076 ntTSL 5 BASIC10.46□□□□□ -0.744e-6■■□□□ 13.8
YBX3P16989 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.594e-7■■□□□ 13.8
YBX3P16989 TTC4-203ENST00000486091 1873 ntTSL 211.14□□□□□ -0.639e-8■■□□□ 13.8
YBX3P16989 HTRA2-210ENST00000484881 740 ntTSL 521.23■□□□□ 0.994e-7■■□□□ 13.8
YBX3P16989 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.887e-8■■□□□ 13.8
YBX3P16989 HTRA2-208ENST00000482331 980 ntTSL 1 (best)15.64■□□□□ 0.094e-7■■□□□ 13.8
YBX3P16989 PSMD1-205ENST00000440838 761 ntTSL 314.81□□□□□ -0.047e-8■■□□□ 13.8
YBX3P16989 TUBA4A-204ENST00000425551 565 ntTSL 314.6□□□□□ -0.077e-8■■□□□ 13.8
YBX3P16989 FBXW2-204ENST00000493559 2154 ntTSL 214.04□□□□□ -0.164e-6■■□□□ 13.8
YBX3P16989 MFF-220ENST00000477362 660 ntTSL 29.45□□□□□ -0.97e-8■■□□□ 13.8
YBX3P16989 USP15-213ENST00000549268 1087 ntTSL 57.84□□□□□ -1.155e-6■■□□□ 13.8
YBX3P16989 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC7.63□□□□□ -1.195e-7■■□□□ 13.8
YBX3P16989 SRPK1-211ENST00000510290 621 ntTSL 37.34□□□□□ -1.233e-11■■□□□ 13.8
YBX3P16989 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.264e-6■■□□□ 13.8
YBX3P16989 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.45e-6■■□□□ 13.8
YBX3P16989 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.445e-7■■□□□ 13.8
YBX3P16989 MFF-218ENST00000476262 1824 ntTSL 26.02□□□□□ -1.457e-8■■□□□ 13.8
YBX3P16989 Y_RNA.462-201ENST00000384268 102 ntBASIC5.53□□□□□ -1.523e-6■■□□□ 13.8
YBX3P16989 ERBIN-215ENST00000511671 589 ntTSL 35.36□□□□□ -1.557e-8■■□□□ 13.8
YBX3P16989 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.95e-6■■□□□ 13.8
YBX3P16989 MACF1-202ENST00000360115 2824 ntTSL 513.6□□□□□ -0.233e-8■■□□□ 13.8
YBX3P16989 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.53e-6■■□□□ 13.8
YBX3P16989 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.86■□□□□ 0.293e-6■■□□□ 13.8
YBX3P16989 COQ8A-205ENST00000478406 3612 ntTSL 215.4■□□□□ 0.063e-6■■□□□ 13.8
YBX3P16989 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.143e-6■■□□□ 13.8
YBX3P16989 EDF1-203ENST00000371649 790 ntTSL 2 BASIC22.15■■□□□ 1.144e-11■■□□□ 13.8
YBX3P16989 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.324e-11■■□□□ 13.8
YBX3P16989 CAPN1-220ENST00000530567 1415 ntTSL 226.85■■□□□ 1.895e-9■■□□□ 13.8
YBX3P16989 CAPN1-214ENST00000528165 2828 ntTSL 214.87□□□□□ -0.035e-9■■□□□ 13.8
YBX3P16989 CENPX-208ENST00000584347 799 ntTSL 2 BASIC19.3■□□□□ 0.685e-8■■□□□ 13.8
YBX3P16989 RNASEK-C17orf49-204ENST00000607564 892 ntTSL 529.37■■■□□ 2.291e-6■■□□□ 13.8
YBX3P16989 RNASEK-205ENST00000552176 1485 ntTSL 227.83■■■□□ 2.051e-6■■□□□ 13.8
YBX3P16989 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC24.82■■□□□ 1.561e-6■■□□□ 13.8
YBX3P16989 RNASEK-201ENST00000546395 952 ntTSL 1 (best)22.9■■□□□ 1.261e-6■■□□□ 13.8
YBX3P16989 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC22.61■■□□□ 1.211e-6■■□□□ 13.8
YBX3P16989 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.19■□□□□ 0.981e-6■■□□□ 13.8
YBX3P16989 RNASEK-206ENST00000552321 739 ntTSL 219.43■□□□□ 0.71e-6■■□□□ 13.8
YBX3P16989 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.681e-6■■□□□ 13.8
YBX3P16989 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.84■□□□□ 0.451e-6■■□□□ 13.8
YBX3P16989 HINT1-210ENST00000520028 82 ntTSL 35.63□□□□□ -1.515e-14■■□□□ 13.8
YBX3P16989 PRKCSH-219ENST00000593101 578 ntTSL 419.01■□□□□ 0.634e-10■■□□□ 13.8
YBX3P16989 PRKCSH-208ENST00000589126 625 ntTSL 517.92■□□□□ 0.464e-10■■□□□ 13.8
YBX3P16989 PRKCSH-218ENST00000593053 588 ntTSL 517.56■□□□□ 0.44e-10■■□□□ 13.8
YBX3P16989 PRKCSH-220ENST00000593104 545 ntTSL 415.75■□□□□ 0.114e-10■■□□□ 13.8
YBX3P16989 PRKCSH-206ENST00000587509 545 ntTSL 415.23■□□□□ 0.034e-10■■□□□ 13.8
YBX3P16989 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.42■□□□□ 0.542e-6■■□□□ 13.8
YBX3P16989 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.09■□□□□ 0.977e-7■■□□□ 13.8
YBX3P16989 PI4KB-205ENST00000430800 965 ntTSL 519.92■□□□□ 0.787e-7■■□□□ 13.8
YBX3P16989 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.197e-7■■□□□ 13.8
YBX3P16989 PI4KB-201ENST00000368872 3331 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.27e-7■■□□□ 13.8
YBX3P16989 PI4KB-202ENST00000368873 3340 ntTSL 2 BASIC12.83□□□□□ -0.357e-7■■□□□ 13.8
YBX3P16989 PI4KB-204ENST00000368875 3983 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.447e-7■■□□□ 13.8
YBX3P16989 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC9.05□□□□□ -0.961e-10■■□□□ 13.8
YBX3P16989 AP000781.2-201ENST00000534081 1639 ntTSL 216.36■□□□□ 0.217e-9■■□□□ 13.8
YBX3P16989 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.31e-7■■□□□ 13.8
YBX3P16989 OIP5-AS1-205ENST00000558945 1269 ntTSL 528.13■■■□□ 2.091e-8■■□□□ 13.8
YBX3P16989 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC25.44■■□□□ 1.661e-8■■□□□ 13.8
YBX3P16989 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC8.91□□□□□ -0.981e-8■■□□□ 13.8
YBX3P16989 FHL2-210ENST00000452732 886 ntTSL 214.47□□□□□ -0.094e-6■■□□□ 13.8
YBX3P16989 NDUFS8-205ENST00000525419 561 ntTSL 329.57■■■□□ 2.321e-12■■□□□ 13.8
YBX3P16989 NDUFS8-208ENST00000526446 814 ntTSL 523.3■■□□□ 1.321e-12■■□□□ 13.8
YBX3P16989 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.821e-12■■□□□ 13.8
YBX3P16989 NDUFS8-204ENST00000524810 616 ntTSL 219.4■□□□□ 0.71e-12■■□□□ 13.8
YBX3P16989 NDUFS8-207ENST00000526339 689 ntTSL 218.73■□□□□ 0.591e-12■■□□□ 13.8
YBX3P16989 NDUFS8-210ENST00000528492 353 ntTSL 1 (best) BASIC14.85□□□□□ -0.031e-12■■□□□ 13.8
YBX3P16989 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.021e-9■■□□□ 13.8
YBX3P16989 RASA1-206ENST00000515800 4979 ntTSL 1 (best)16.88■□□□□ 0.294e-7■■□□□ 13.8
YBX3P16989 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.144e-7■■□□□ 13.8
YBX3P16989 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.534e-7■■□□□ 13.8
YBX3P16989 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.634e-7■■□□□ 13.8
YBX3P16989 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.764e-7■■□□□ 13.8
YBX3P16989 JPT1-204ENST00000465454 509 ntTSL 417.25■□□□□ 0.351e-12■■□□□ 13.8
YBX3P16989 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.472e-6■■□□□ 13.8
YBX3P16989 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.12■□□□□ 0.972e-6■■□□□ 13.8
YBX3P16989 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.782e-6■■□□□ 13.8
YBX3P16989 PPP1R7-211ENST00000438799 976 ntTSL 1 (best)19.52■□□□□ 0.722e-6■■□□□ 13.8
YBX3P16989 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC18.01■□□□□ 0.472e-6■■□□□ 13.8
YBX3P16989 PPP1R7-206ENST00000406106 965 ntTSL 1 (best) BASIC15.89■□□□□ 0.132e-6■■□□□ 13.8
YBX3P16989 PPP1R7-218ENST00000491715 773 ntTSL 213.97□□□□□ -0.172e-6■■□□□ 13.8
YBX3P16989 PPP1R7-213ENST00000450367 1030 ntTSL 512.78□□□□□ -0.362e-6■■□□□ 13.8
YBX3P16989 PPP1R7-209ENST00000423280 959 ntTSL 212.04□□□□□ -0.482e-6■■□□□ 13.8
YBX3P16989 PPP1R7-217ENST00000485630 828 ntTSL 310.75□□□□□ -0.692e-6■■□□□ 13.8
YBX3P16989 PPP1R7-204ENST00000402734 883 ntTSL 3 BASIC9.5□□□□□ -0.892e-6■■□□□ 13.8
YBX3P16989 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC8.65□□□□□ -1.022e-6■■□□□ 13.8
YBX3P16989 CENPN-206ENST00000562943 461 ntTSL 29.67□□□□□ -0.861e-8■■□□□ 13.8
YBX3P16989 FLNA-218ENST00000498491 914 ntTSL 522.24■■□□□ 1.154e-25■■□□□ 13.8
YBX3P16989 IDH3B-207ENST00000477689 608 ntTSL 520.07■□□□□ 0.85e-11■■□□□ 13.8
YBX3P16989 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.158e-8■■□□□ 13.8
YBX3P16989 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.773e-9■■□□□ 13.8
YBX3P16989 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.33e-9■■□□□ 13.8
YBX3P16989 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.083e-9■■□□□ 13.8
YBX3P16989 UBE2I-216ENST00000567383 538 ntTSL 422.49■■□□□ 1.191e-6■■□□□ 13.8
YBX3P16989 ACSM3-205ENST00000561584 561 ntTSL 416.17■□□□□ 0.183e-17■■□□□ 13.8
YBX3P16989 YBX3-212ENST00000542002 952 ntTSL 212.71□□□□□ -0.377e-7■■□□□ 13.8
YBX3P16989 DDX54-206ENST00000549271 756 ntTSL 217.65■□□□□ 0.423e-7■■□□□ 13.8
YBX3P16989 SIGIRR-210ENST00000527987 803 ntTSL 224.63■■□□□ 1.531e-8■■□□□ 13.8
Retrieved 100 of 29,075 protein–RNA pairs in 627.6 ms