RNA–Protein interactions for RNA: ENST00000549268.1

USP15-213, Transcript of ubiquitin specific peptidase 15, humanhuman

TSL 5

Gene USP15, Length 1,087 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP15-213ENST00000549268 AEBP2Q6ZN18 517 aaPredicted RBP28.6■■■□□ 2.17
USP15-213ENST00000549268 CHIC1Q5VXU3 224 aa27.8■■■□□ 2.04
USP15-213ENST00000549268 PHF23Q9BUL5 403 aaPredicted RBP24.39■■□□□ 1.49
USP15-213ENST00000549268 SENP3Q9H4L4 574 aaPredicted RBP24.37■■□□□ 1.49
USP15-213ENST00000549268 FOXD1Q16676 465 aa22.58■■□□□ 1.21
USP15-213ENST00000549268 PLPPR3Q6T4P5 718 aa22.5■■□□□ 1.19
USP15-213ENST00000549268 PPP6R1Q9UPN7 881 aa21.56■■□□□ 1.04
USP15-213ENST00000549268 ADRA2BP18089 450 aa21.51■■□□□ 1.03
USP15-213ENST00000549268 PIAS4Q8N2W9 510 aaPredicted RBP21.23■□□□□ 0.99
USP15-213ENST00000549268 MSH5O43196 834 aa20.97■□□□□ 0.95
USP15-213ENST00000549268 POTEDQ86YR6 584 aa19.94■□□□□ 0.78
USP15-213ENST00000549268 SCAF1Q9H7N4 1312 aaKnown RBP19.78■□□□□ 0.76
USP15-213ENST00000549268 PPP4R3CPQ6ZMV5 832 aa19.76■□□□□ 0.75
USP15-213ENST00000549268 MAPK8IP2Q13387 824 aaPredicted RBP19.56■□□□□ 0.72
USP15-213ENST00000549268 DMRT2Q9Y5R5 561 aa19.42■□□□□ 0.7
USP15-213ENST00000549268 CNKSR2Q8WXI2 1034 aa19.29■□□□□ 0.68
USP15-213ENST00000549268 NCBP3Q53F19 620 aaKnown RBP19.24■□□□□ 0.67
USP15-213ENST00000549268 KCNA4P22459 653 aa19.06■□□□□ 0.64
USP15-213ENST00000549268 RNF216Q9NWF9 866 aaPredicted RBP18.98■□□□□ 0.63
USP15-213ENST00000549268 HOXD11P31277 338 aaPredicted RBP18.96■□□□□ 0.63
USP15-213ENST00000549268 NPM3O75607 178 aaKnown RBP18.9■□□□□ 0.62
USP15-213ENST00000549268 DNAJC5BQ9UF47 199 aa18.57■□□□□ 0.56
USP15-213ENST00000549268 DCAF8L1A6NGE4 600 aa18.45■□□□□ 0.54
USP15-213ENST00000549268 SLC4A1APQ9BWU0 796 aaKnown RBP18.13■□□□□ 0.49
USP15-213ENST00000549268 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.99■□□□□ 0.473e-8■□□□□ 10.5
USP15-213ENST00000549268 RNF39Q9H2S5 420 aa17.93■□□□□ 0.46
USP15-213ENST00000549268 SLC4A2P04920 1241 aa17.9■□□□□ 0.46
USP15-213ENST00000549268 C1QBPQ07021 282 aaKnown RBP17.74■□□□□ 0.43
USP15-213ENST00000549268 U3KPZ7 1027 aaPredicted RBP17.69■□□□□ 0.42
USP15-213ENST00000549268 FOXD4L1Q9NU39 408 aa17.64■□□□□ 0.41
USP15-213ENST00000549268 CACNB1Q02641 598 aaPredicted RBP17.54■□□□□ 0.4
USP15-213ENST00000549268 ZBTB22O15209 634 aa17.52■□□□□ 0.4
USP15-213ENST00000549268 MYCNP04198 464 aaPredicted RBP17.51■□□□□ 0.39
USP15-213ENST00000549268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.49■□□□□ 0.39
USP15-213ENST00000549268 HNRNPUL2Q1KMD3 747 aaKnown RBP17.49■□□□□ 0.39
USP15-213ENST00000549268 SAMD1Q6SPF0 538 aaPredicted RBP17.4■□□□□ 0.38
USP15-213ENST00000549268 APLP2Q06481 763 aa17.35■□□□□ 0.37
USP15-213ENST00000549268 CSRNP3Q8WYN3 585 aa17.29■□□□□ 0.36
USP15-213ENST00000549268 EHMT2Q96KQ7 1210 aa17.29■□□□□ 0.36
USP15-213ENST00000549268 SPINK5Q9NQ38 1064 aaPredicted RBP17.21■□□□□ 0.35
USP15-213ENST00000549268 CAPN15O75808 1086 aa17.16■□□□□ 0.34
USP15-213ENST00000549268 ATXN8OSP0DMR3 200 aa17.12■□□□□ 0.33
USP15-213ENST00000549268 ZNF219Q9P2Y4 722 aaPredicted RBP17.1■□□□□ 0.33
USP15-213ENST00000549268 TRHP20396 242 aaPredicted RBP17.02■□□□□ 0.32
USP15-213ENST00000549268 DSG3P32926 999 aa16.98■□□□□ 0.31
USP15-213ENST00000549268 ATF5Q9Y2D1 282 aaPredicted RBP16.97■□□□□ 0.31
USP15-213ENST00000549268 ABCB7O75027 752 aa16.77■□□□□ 0.28
USP15-213ENST00000549268 POLA2Q14181 598 aa16.74■□□□□ 0.27
USP15-213ENST00000549268 ZBTB12Q9Y330 459 aaPredicted RBP16.54■□□□□ 0.24
USP15-213ENST00000549268 FBLN2P98095 1184 aa16.34■□□□□ 0.21
USP15-213ENST00000549268 MKRN4PQ13434 485 aaPredicted RBP16.26■□□□□ 0.19
USP15-213ENST00000549268 RBM42Q9BTD8 480 aaKnown RBP16.22■□□□□ 0.19
USP15-213ENST00000549268 OSCARQ8IYS5 282 aa16.15■□□□□ 0.18
USP15-213ENST00000549268 SPDYE2BA6NHP3 402 aa16.06■□□□□ 0.16
USP15-213ENST00000549268 SPDYE6P0CI01 402 aa16.06■□□□□ 0.16
USP15-213ENST00000549268 SPDYE2Q495Y8 402 aa16.06■□□□□ 0.16
USP15-213ENST00000549268 AKT1S1Q96B36 256 aa15.98■□□□□ 0.15
USP15-213ENST00000549268 ZNF692Q9BU19 519 aaPredicted RBP15.91■□□□□ 0.14
USP15-213ENST00000549268 SSUH2Q9Y2M2 353 aa15.91■□□□□ 0.14
USP15-213ENST00000549268 SPDYE4A6NLX3 237 aa15.81■□□□□ 0.12
USP15-213ENST00000549268 REM2Q8IYK8 340 aaPredicted RBP15.78■□□□□ 0.12
USP15-213ENST00000549268 PABPN1Q86U42 306 aaKnown RBP eCLIP15.68■□□□□ 0.1
USP15-213ENST00000549268 SPDYE1Q8NFV5 336 aaPredicted RBP15.61■□□□□ 0.09
USP15-213ENST00000549268 FKBP8Q14318 412 aa15.6■□□□□ 0.09
USP15-213ENST00000549268 PROM2Q8N271 834 aa15.6■□□□□ 0.09
USP15-213ENST00000549268 PITPNM1O00562 1244 aa15.58■□□□□ 0.08
USP15-213ENST00000549268 CHRDL2Q6WN34 429 aa15.58■□□□□ 0.08
USP15-213ENST00000549268 POTEHQ6S545 545 aa15.52■□□□□ 0.08
USP15-213ENST00000549268 STAG3Q9UJ98 1225 aa15.46■□□□□ 0.07
USP15-213ENST00000549268 CLEC11AQ9Y240 323 aa15.46■□□□□ 0.07
USP15-213ENST00000549268 FXR2P51116 673 aaKnown RBP eCLIP15.38■□□□□ 0.05
USP15-213ENST00000549268 PRR29P0C7W0 189 aa15.35■□□□□ 0.05
USP15-213ENST00000549268 PIP4P2Q8N4L2 257 aa15.33■□□□□ 0.04
USP15-213ENST00000549268 FBXO3Q9UK99 471 aa15.2■□□□□ 0.02
USP15-213ENST00000549268 PRKAR2AP13861 404 aaKnown RBP15.18■□□□□ 0.02
USP15-213ENST00000549268 CREBZFQ9NS37 354 aa15.12■□□□□ 0.01
USP15-213ENST00000549268 CHADLQ6NUI6 762 aa15.08■□□□□ 0
USP15-213ENST00000549268 FARP1Q9Y4F1 1045 aaPredicted RBP15.01□□□□□ -0.01
USP15-213ENST00000549268 MIER1Q8N108 512 aa15□□□□□ -0.01
USP15-213ENST00000549268 PLEKHG5O94827 1062 aa14.98□□□□□ -0.01
USP15-213ENST00000549268 MNX1P50219 401 aaPredicted RBP14.96□□□□□ -0.01
USP15-213ENST00000549268 VASPP50552 380 aaPredicted RBP14.94□□□□□ -0.02
USP15-213ENST00000549268 PLCD3Q8N3E9 789 aa14.94□□□□□ -0.02
USP15-213ENST00000549268 NPM1P06748 294 aaKnown RBP eCLIP14.89□□□□□ -0.03
USP15-213ENST00000549268 ZBTB47Q9UFB7 747 aaPredicted RBP14.89□□□□□ -0.03
USP15-213ENST00000549268 HAX1O00165 279 aa14.86□□□□□ -0.03
USP15-213ENST00000549268 C19orf67A6NJJ6 358 aa14.85□□□□□ -0.03
USP15-213ENST00000549268 CD44P16070 742 aaKnown RBP14.74□□□□□ -0.05
USP15-213ENST00000549268 IFNLR1Q8IU57 520 aaPredicted RBP14.72□□□□□ -0.05
USP15-213ENST00000549268 EVX2Q03828 476 aa14.71□□□□□ -0.05
USP15-213ENST00000549268 KLHL34Q8N239 644 aa14.69□□□□□ -0.06
USP15-213ENST00000549268 PAK3O75914 559 aaPredicted RBP14.67□□□□□ -0.06
USP15-213ENST00000549268 NUBP1P53384 320 aa14.67□□□□□ -0.06
USP15-213ENST00000549268 SP7Q8TDD2 431 aaPredicted RBP14.64□□□□□ -0.07
USP15-213ENST00000549268 RASEFQ8IZ41 740 aa14.62□□□□□ -0.07
USP15-213ENST00000549268 ZRANB1Q9UGI0 708 aa14.62□□□□□ -0.07
USP15-213ENST00000549268 SPOCK2Q92563 424 aa14.6□□□□□ -0.07
USP15-213ENST00000549268 CLCN6P51797 869 aa14.59□□□□□ -0.07
USP15-213ENST00000549268 ZNF579Q8NAF0 562 aaKnown RBP14.59□□□□□ -0.07
USP15-213ENST00000549268 FAM212AQ96EL1 285 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms