Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCM2LQ9NUG4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCM2LQ9NUG4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCM2LQ9NUG4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCM2LQ9NUG4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCM2LQ9NUG4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCM2LQ9NUG4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCM2LQ9NUG4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 AC008403.3-201ENST00000598924 454 ntBASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCM2LQ9NUG4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.89■□□□□ 0.46
CCM2LQ9NUG4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCM2LQ9NUG4 ESPNP-201ENST00000270691 2015 ntBASIC17.89■□□□□ 0.46
CCM2LQ9NUG4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 AL355472.2-201ENST00000422958 438 ntBASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 SNORA78-201ENST00000459373 127 ntBASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.89■□□□□ 0.45
CCM2LQ9NUG4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCM2LQ9NUG4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCM2LQ9NUG4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.88■□□□□ 0.45
CCM2LQ9NUG4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCM2LQ9NUG4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms