Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 AC135279.3-201ENST00000610945 1311 ntBASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCDC28AQ8IWP9 AC008741.2-201ENST00000612792 3115 ntBASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC28AQ8IWP9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms