Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 CROCCP3-202ENST00000420820 1947 ntBASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC144BQ3MJ40 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
CCDC144BQ3MJ40 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.83■■□□□ 1.08
CCDC144BQ3MJ40 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC144BQ3MJ40 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.83■■□□□ 1.08
CCDC144BQ3MJ40 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC144BQ3MJ40 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 CA15P1-201ENST00000481698 905 ntBASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
CCDC144BQ3MJ40 KRT8P41-201ENST00000533985 1514 ntBASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 AC104581.1-202ENST00000635932 2618 ntBASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 AC005332.8-201ENST00000622750 2735 ntBASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CCDC144BQ3MJ40 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC144BQ3MJ40 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC144BQ3MJ40 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC144BQ3MJ40 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC144BQ3MJ40 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CCDC144BQ3MJ40 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC144BQ3MJ40 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
CCDC144BQ3MJ40 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CCDC144BQ3MJ40 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms