Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.59■□□□□ 0.25
SOX2P48431 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.59■□□□□ 0.25
SOX2P48431 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
SOX2P48431 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX2P48431 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.59■□□□□ 0.25
SOX2P48431 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SOX2P48431 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SOX2P48431 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
SOX2P48431 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SOX2P48431 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SOX2P48431 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.58■□□□□ 0.25
SOX2P48431 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.58■□□□□ 0.25
SOX2P48431 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.58■□□□□ 0.25
SOX2P48431 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
SOX2P48431 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.58■□□□□ 0.24
SOX2P48431 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.58■□□□□ 0.24
SOX2P48431 AL121832.2-201ENST00000610979 668 ntBASIC16.58■□□□□ 0.24
SOX2P48431 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SOX2P48431 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
SOX2P48431 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
SOX2P48431 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX2P48431 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.58■□□□□ 0.24
SOX2P48431 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 AC126763.1-201ENST00000552015 2118 ntBASIC16.58■□□□□ 0.24
SOX2P48431 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SOX2P48431 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX2P48431 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SOX2P48431 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 AC068880.1-201ENST00000507289 2297 ntBASIC16.57■□□□□ 0.24
SOX2P48431 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.57■□□□□ 0.24
SOX2P48431 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.57■□□□□ 0.24
SOX2P48431 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC16.57■□□□□ 0.24
SOX2P48431 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.57■□□□□ 0.24
SOX2P48431 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.57■□□□□ 0.24
SOX2P48431 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.57■□□□□ 0.24
SOX2P48431 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
SOX2P48431 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SOX2P48431 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX2P48431 NOC2LP2-201ENST00000407594 1944 ntBASIC16.57■□□□□ 0.24
SOX2P48431 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SOX2P48431 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
SOX2P48431 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SOX2P48431 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SOX2P48431 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC16.56■□□□□ 0.24
SOX2P48431 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.56■□□□□ 0.24
SOX2P48431 AC006970.2-201ENST00000450065 779 ntBASIC16.56■□□□□ 0.24
SOX2P48431 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC16.56■□□□□ 0.24
SOX2P48431 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.56■□□□□ 0.24
SOX2P48431 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.56■□□□□ 0.24
SOX2P48431 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC16.56■□□□□ 0.24
SOX2P48431 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.56■□□□□ 0.24
SOX2P48431 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SOX2P48431 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.56■□□□□ 0.24
SOX2P48431 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX2P48431 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.56■□□□□ 0.24
SOX2P48431 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.56■□□□□ 0.24
SOX2P48431 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms