Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTPN9P43378 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.55■□□□□ 0.72
PTPN9P43378 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
PTPN9P43378 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN9P43378 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
PTPN9P43378 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN9P43378 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN9P43378 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN9P43378 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN9P43378 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN9P43378 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN9P43378 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.55■□□□□ 0.72
PTPN9P43378 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.55■□□□□ 0.72
PTPN9P43378 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
PTPN9P43378 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.55■□□□□ 0.72
PTPN9P43378 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 NAPSB-206ENST00000562112 1266 ntBASIC19.55■□□□□ 0.72
PTPN9P43378 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 AC010653.2-201ENST00000623505 997 ntBASIC19.55■□□□□ 0.72
PTPN9P43378 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.55■□□□□ 0.72
PTPN9P43378 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTPN9P43378 AC120498.9-201ENST00000339021 3867 ntBASIC19.54■□□□□ 0.72
PTPN9P43378 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
PTPN9P43378 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTPN9P43378 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
PTPN9P43378 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 MIR564-202ENST00000385049 94 ntBASIC19.53■□□□□ 0.72
PTPN9P43378 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 MIR3180-5-201ENST00000583743 153 ntBASIC19.53■□□□□ 0.72
PTPN9P43378 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
PTPN9P43378 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PTPN9P43378 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PTPN9P43378 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN9P43378 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN9P43378 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PTPN9P43378 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN9P43378 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN9P43378 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
PTPN9P43378 AC128688.1-201ENST00000487626 519 ntBASIC19.52■□□□□ 0.72
PTPN9P43378 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
PTPN9P43378 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN9P43378 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN9P43378 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.52■□□□□ 0.72
PTPN9P43378 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PTPN9P43378 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
PTPN9P43378 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PTPN9P43378 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PTPN9P43378 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PTPN9P43378 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
PTPN9P43378 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PTPN9P43378 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.52■□□□□ 0.71
PTPN9P43378 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
PTPN9P43378 KRT8P45-201ENST00000414328 1447 ntBASIC19.51■□□□□ 0.71
PTPN9P43378 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
PTPN9P43378 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.51■□□□□ 0.71
PTPN9P43378 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PTPN9P43378 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
PTPN9P43378 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms