Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB2O43679 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB2O43679 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB2O43679 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB2O43679 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB2O43679 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
LDB2O43679 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.82■□□□□ 0.6
LDB2O43679 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.82■□□□□ 0.6
LDB2O43679 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.82■□□□□ 0.6
LDB2O43679 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDB2O43679 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LDB2O43679 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.81■□□□□ 0.6
LDB2O43679 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
LDB2O43679 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.81■□□□□ 0.6
LDB2O43679 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB2O43679 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.81■□□□□ 0.6
LDB2O43679 MIR1238-201ENST00000408483 83 ntBASIC18.81■□□□□ 0.6
LDB2O43679 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB2O43679 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB2O43679 AL023803.3-201ENST00000615559 522 ntBASIC18.81■□□□□ 0.6
LDB2O43679 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB2O43679 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 AL109659.2-201ENST00000606809 1674 ntBASIC18.81■□□□□ 0.6
LDB2O43679 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 AL357033.4-201ENST00000617703 1807 ntBASIC18.81■□□□□ 0.6
LDB2O43679 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LDB2O43679 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.81■□□□□ 0.6
LDB2O43679 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDB2O43679 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.8■□□□□ 0.6
LDB2O43679 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 GPAT2P1-201ENST00000444924 1672 ntBASIC18.8■□□□□ 0.6
LDB2O43679 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
LDB2O43679 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.8■□□□□ 0.6
LDB2O43679 AL023284.2-201ENST00000405850 579 ntBASIC18.8■□□□□ 0.6
LDB2O43679 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.8■□□□□ 0.6
LDB2O43679 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.8■□□□□ 0.6
LDB2O43679 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LDB2O43679 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
LDB2O43679 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
LDB2O43679 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDB2O43679 AC008556.1-201ENST00000610908 2040 ntBASIC18.79■□□□□ 0.6
LDB2O43679 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.79■□□□□ 0.6
LDB2O43679 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.79■□□□□ 0.6
LDB2O43679 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LDB2O43679 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.79■□□□□ 0.6
LDB2O43679 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.79■□□□□ 0.6
LDB2O43679 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.79■□□□□ 0.6
LDB2O43679 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.79■□□□□ 0.6
LDB2O43679 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDB2O43679 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
LDB2O43679 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.79■□□□□ 0.6
LDB2O43679 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms