Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NID2-208ENST00000617139 3827 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 TUBB8P6-201ENST00000436895 1288 ntBASIC5.81□□□□□ -1.48
SYNE1Q8NF91 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 HOMER2P1-201ENST00000455653 964 ntBASIC5.81□□□□□ -1.48
SYNE1Q8NF91 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ETFA-216ENST00000560726 942 ntTSL 3 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SNX5-210ENST00000481323 562 ntTSL 3 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AL390719.1-204ENST00000412397 1219 ntBASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 DERL1-203ENST00000419562 918 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 C1QL1P1-201ENST00000568105 661 ntBASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 AC104417.2-201ENST00000562989 1793 ntBASIC5.81□□□□□ -1.48
SYNE1Q8NF91 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SYNE1Q8NF91 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
SYNE1Q8NF91 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SYNE1Q8NF91 AC010653.2-201ENST00000623505 997 ntBASIC5.8□□□□□ -1.48
SYNE1Q8NF91 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC5.8□□□□□ -1.48
SYNE1Q8NF91 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms