Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC21.81■■□□□ 1.08
CTCFP49711 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
CTCFP49711 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CTCFP49711 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
CTCFP49711 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CTCFP49711 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.81■■□□□ 1.08
CTCFP49711 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CTCFP49711 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.81■■□□□ 1.08
CTCFP49711 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
CTCFP49711 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC21.81■■□□□ 1.08
CTCFP49711 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC21.81■■□□□ 1.08
CTCFP49711 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.81■■□□□ 1.08
CTCFP49711 AC011467.4-201ENST00000594891 528 ntBASIC21.81■■□□□ 1.08
CTCFP49711 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
CTCFP49711 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.81■■□□□ 1.08
CTCFP49711 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CTCFP49711 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CTCFP49711 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.8■■□□□ 1.08
CTCFP49711 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CTCFP49711 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CTCFP49711 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CTCFP49711 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 AC073130.3-201ENST00000624389 2278 ntBASIC21.8■■□□□ 1.08
CTCFP49711 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.8■■□□□ 1.08
CTCFP49711 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.8■■□□□ 1.08
CTCFP49711 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
CTCFP49711 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.8■■□□□ 1.08
CTCFP49711 POM121L3P-201ENST00000419331 1163 ntBASIC21.8■■□□□ 1.08
CTCFP49711 KRT18P3-201ENST00000451602 1288 ntBASIC21.8■■□□□ 1.08
CTCFP49711 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
CTCFP49711 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
CTCFP49711 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC21.8■■□□□ 1.08
CTCFP49711 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.8■■□□□ 1.08
CTCFP49711 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
CTCFP49711 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC21.8■■□□□ 1.08
CTCFP49711 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.8■■□□□ 1.08
CTCFP49711 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC21.8■■□□□ 1.08
CTCFP49711 AL591684.3-201ENST00000605187 298 ntBASIC21.8■■□□□ 1.08
CTCFP49711 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
CTCFP49711 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CTCFP49711 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.79■■□□□ 1.08
CTCFP49711 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 HIST2H3DP1-201ENST00000401004 416 ntBASIC21.79■■□□□ 1.08
CTCFP49711 SYS1-203ENST00000414310 795 ntTSL 3 BASIC21.79■■□□□ 1.08
CTCFP49711 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC21.79■■□□□ 1.08
CTCFP49711 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.79■■□□□ 1.08
CTCFP49711 CD63-204ENST00000546939 779 ntTSL 3 BASIC21.79■■□□□ 1.08
CTCFP49711 MIR3917-201ENST00000580971 93 ntBASIC21.79■■□□□ 1.08
CTCFP49711 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.79■■□□□ 1.08
CTCFP49711 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.79■■□□□ 1.08
CTCFP49711 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CTCFP49711 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.79■■□□□ 1.08
CTCFP49711 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CTCFP49711 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTCFP49711 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CTCFP49711 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CTCFP49711 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.78■■□□□ 1.08
CTCFP49711 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
CTCFP49711 PMP22-202ENST00000395936 816 ntTSL 3 BASIC21.78■■□□□ 1.08
CTCFP49711 PON3-203ENST00000427422 894 ntTSL 3 BASIC21.78■■□□□ 1.08
CTCFP49711 MINOS1P3-201ENST00000457048 203 ntBASIC21.78■■□□□ 1.08
CTCFP49711 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.78■■□□□ 1.08
CTCFP49711 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.78■■□□□ 1.08
CTCFP49711 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTCFP49711 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms