Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RORAP35398 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RORAP35398 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
RORAP35398 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RORAP35398 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RORAP35398 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
RORAP35398 Z82202.1-201ENST00000623446 1880 ntBASIC17.9■□□□□ 0.46
RORAP35398 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
RORAP35398 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.9■□□□□ 0.46
RORAP35398 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.9■□□□□ 0.46
RORAP35398 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.9■□□□□ 0.46
RORAP35398 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.9■□□□□ 0.46
RORAP35398 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.9■□□□□ 0.46
RORAP35398 CR769767.2-201ENST00000622735 460 ntBASIC17.9■□□□□ 0.46
RORAP35398 AL358472.4-201ENST00000633140 710 ntBASIC17.9■□□□□ 0.46
RORAP35398 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
RORAP35398 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.9■□□□□ 0.46
RORAP35398 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.9■□□□□ 0.46
RORAP35398 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.9■□□□□ 0.46
RORAP35398 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.9■□□□□ 0.46
RORAP35398 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.9■□□□□ 0.46
RORAP35398 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RORAP35398 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
RORAP35398 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RORAP35398 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
RORAP35398 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RORAP35398 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RORAP35398 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
RORAP35398 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
RORAP35398 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.89■□□□□ 0.45
RORAP35398 AL359075.1-203ENST00000462729 1002 ntBASIC17.89■□□□□ 0.45
RORAP35398 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.89■□□□□ 0.45
RORAP35398 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.89■□□□□ 0.45
RORAP35398 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RORAP35398 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.89■□□□□ 0.45
RORAP35398 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.89■□□□□ 0.45
RORAP35398 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RORAP35398 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.89■□□□□ 0.45
RORAP35398 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
RORAP35398 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
RORAP35398 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
RORAP35398 GPAT2P1-201ENST00000444924 1672 ntBASIC17.88■□□□□ 0.45
RORAP35398 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 KRT18P38-201ENST00000449496 1282 ntBASIC17.88■□□□□ 0.45
RORAP35398 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RORAP35398 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.88■□□□□ 0.45
RORAP35398 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
RORAP35398 AC091076.1-201ENST00000610741 619 ntBASIC17.88■□□□□ 0.45
RORAP35398 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RORAP35398 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
RORAP35398 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 AC093484.2-201ENST00000580996 2166 ntBASIC17.88■□□□□ 0.45
RORAP35398 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.88■□□□□ 0.45
RORAP35398 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
RORAP35398 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
RORAP35398 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RORAP35398 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.87■□□□□ 0.45
RORAP35398 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.87■□□□□ 0.45
RORAP35398 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RORAP35398 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.87■□□□□ 0.45
RORAP35398 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RORAP35398 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RORAP35398 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
RORAP35398 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RORAP35398 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RORAP35398 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.87■□□□□ 0.45
RORAP35398 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RORAP35398 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms