Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 KANSL1-231ENST00000639853 1425 ntTSL 57.1□□□□□ -1.274e-6■□□□□ 10.2
SMNDC1O75940 KANSL1-234ENST00000640636 605 ntTSL 55.23□□□□□ -1.574e-6■□□□□ 10.2
SMNDC1O75940 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.867e-10■□□□□ 10.2
SMNDC1O75940 FKBP10-204ENST00000464180 1129 ntTSL 218.96■□□□□ 0.636e-14■□□□□ 10.2
SMNDC1O75940 MARS-226ENST00000551892 748 ntTSL 319.04■□□□□ 0.642e-9■□□□□ 10.2
SMNDC1O75940 MARS-202ENST00000447721 1328 ntTSL 216.89■□□□□ 0.292e-9■□□□□ 10.2
SMNDC1O75940 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.162e-9■□□□□ 10.2
SMNDC1O75940 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.81■□□□□ 0.122e-9■□□□□ 10.2
SMNDC1O75940 MARS-204ENST00000545888 2979 ntTSL 515.69■□□□□ 0.12e-9■□□□□ 10.2
SMNDC1O75940 MARS-203ENST00000537638 3592 ntTSL 214.77□□□□□ -0.052e-9■□□□□ 10.2
SMNDC1O75940 HERC1-214ENST00000561400 2215 ntTSL 212.03□□□□□ -0.482e-9■□□□□ 10.2
SMNDC1O75940 MARS-220ENST00000549827 465 ntTSL 210.9□□□□□ -0.662e-9■□□□□ 10.2
SMNDC1O75940 MARS-228ENST00000552371 699 ntTSL 39.71□□□□□ -0.862e-9■□□□□ 10.2
SMNDC1O75940 SNORD19.2-201ENST00000516978 73 ntBASIC3.86□□□□□ -1.792e-14■□□□□ 10.2
SMNDC1O75940 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.98□□□□□ -2.572e-14■□□□□ 10.2
SMNDC1O75940 HNRNPH1-241ENST00000521790 549 ntTSL 27.58□□□□□ -1.25e-28■□□□□ 10.2
SMNDC1O75940 HNRNPH1-235ENST00000519943 748 ntTSL 26.07□□□□□ -1.445e-28■□□□□ 10.2
SMNDC1O75940 LUC7L-207ENST00000426094 2737 ntTSL 1 (best)21.57■■□□□ 1.043e-6■□□□□ 10.1
SMNDC1O75940 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.99■□□□□ 0.473e-6■□□□□ 10.1
SMNDC1O75940 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.55■□□□□ 0.243e-6■□□□□ 10.1
SMNDC1O75940 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.213e-6■□□□□ 10.1
SMNDC1O75940 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.27■□□□□ 0.23e-6■□□□□ 10.1
SMNDC1O75940 LUC7L-217ENST00000490762 2643 ntTSL 1 (best)15.76■□□□□ 0.113e-6■□□□□ 10.1
SMNDC1O75940 LUC7L-206ENST00000419516 1211 ntTSL 512.06□□□□□ -0.483e-6■□□□□ 10.1
SMNDC1O75940 LUC7L-205ENST00000418978 989 ntTSL 510.95□□□□□ -0.663e-6■□□□□ 10.1
SMNDC1O75940 LUC7L-210ENST00000430864 695 ntTSL 510.75□□□□□ -0.693e-6■□□□□ 10.1
SMNDC1O75940 SRCAP-205ENST00000483083 5937 ntTSL 210.86□□□□□ -0.671e-25■□□□□ 10.1
SMNDC1O75940 SNORA30-201ENST00000384028 129 ntBASIC7.49□□□□□ -1.211e-25■□□□□ 10.1
SMNDC1O75940 MALAT1-204ENST00000610481 353 ntTSL 3 BASIC9.82□□□□□ -0.846e-64■□□□□ 10.1
SMNDC1O75940 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC8.16□□□□□ -1.16e-64■□□□□ 10.1
SMNDC1O75940 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.381e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.85■□□□□ 0.291e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.97■□□□□ 0.151e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-219ENST00000592604 2940 ntTSL 1 (best)15.74■□□□□ 0.111e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.051e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.011e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC14.09□□□□□ -0.151e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-217ENST00000591595 3377 ntTSL 213.71□□□□□ -0.211e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.251e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC13.41□□□□□ -0.261e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-208ENST00000585799 3842 ntTSL 212.28□□□□□ -0.441e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-210ENST00000586892 559 ntTSL 411.9□□□□□ -0.51e-8■□□□□ 10.1
SMNDC1O75940 SMARCA4-218ENST00000592158 409 ntTSL 27.98□□□□□ -1.131e-8■□□□□ 10.1
SMNDC1O75940 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC11.66□□□□□ -0.545e-9■□□□□ 10.1
SMNDC1O75940 AC138409.2-202ENST00000507274 458 ntBASIC6.62□□□□□ -1.355e-9■□□□□ 10.1
SMNDC1O75940 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.95□□□□□ -0.343e-6■□□□□ 10.1
SMNDC1O75940 GUSBP1-201ENST00000449061 758 ntBASIC10.39□□□□□ -0.753e-6■□□□□ 10.1
SMNDC1O75940 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC7.19□□□□□ -1.263e-6■□□□□ 10.1
SMNDC1O75940 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.143e-7■□□□□ 10.1
SMNDC1O75940 EIF4G1-224ENST00000444861 2384 ntTSL 1 (best)24.18■■□□□ 1.465e-9■□□□□ 10.1
SMNDC1O75940 EIF4G1-226ENST00000450424 2658 ntTSL 519.75■□□□□ 0.755e-9■□□□□ 10.1
SMNDC1O75940 EIF4G1-213ENST00000426123 2907 ntTSL 217.65■□□□□ 0.425e-9■□□□□ 10.1
SMNDC1O75940 EIF4G1-210ENST00000421110 2755 ntTSL 517.19■□□□□ 0.345e-9■□□□□ 10.1
SMNDC1O75940 EIF4G1-208ENST00000413967 2808 ntTSL 215.53■□□□□ 0.085e-9■□□□□ 10.1
SMNDC1O75940 VGLL4-206ENST00000418000 792 ntTSL 322.64■■□□□ 1.216e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-205ENST00000417466 894 ntTSL 320.22■□□□□ 0.836e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.75■□□□□ 0.756e-7■□□□□ 10.1
SMNDC1O75940 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.536e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.74■□□□□ 0.436e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.426e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-205ENST00000433366 5773 ntTSL 516.87■□□□□ 0.296e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.27■□□□□ 0.196e-7■□□□□ 10.1
SMNDC1O75940 HNRNPM-205ENST00000596295 910 ntTSL 316.11■□□□□ 0.176e-7■□□□□ 10.1
SMNDC1O75940 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.03■□□□□ 0.166e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.9■□□□□ 0.146e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-204ENST00000417206 581 ntTSL 415.86■□□□□ 0.136e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-204ENST00000431225 1687 ntTSL 515.76■□□□□ 0.116e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.016e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.056e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.95□□□□□ -0.186e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-212ENST00000437722 544 ntTSL 313.89□□□□□ -0.196e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-209ENST00000424709 437 ntTSL 313.34□□□□□ -0.276e-7■□□□□ 10.1
SMNDC1O75940 HNRNPU-212ENST00000638230 1922 ntTSL 513.27□□□□□ -0.296e-7■□□□□ 10.1
SMNDC1O75940 GDA-203ENST00000376986 1771 ntTSL 2 BASIC12.94□□□□□ -0.346e-7■□□□□ 10.1
SMNDC1O75940 HNRNPM-216ENST00000602219 1809 nt12.6□□□□□ -0.396e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-212ENST00000492395 4490 ntTSL 1 (best)12.58□□□□□ -0.46e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-207ENST00000419541 466 ntTSL 312.55□□□□□ -0.46e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-215ENST00000458499 766 ntTSL 312.55□□□□□ -0.46e-7■□□□□ 10.1
SMNDC1O75940 VGLL4-201ENST00000273038 3725 ntTSL 1 (best) BASIC12.15□□□□□ -0.466e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-202ENST00000412198 3611 ntTSL 212.07□□□□□ -0.486e-7■□□□□ 10.1
SMNDC1O75940 GDA-202ENST00000358399 5340 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.576e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-214ENST00000603187 3713 ntTSL 1 (best)11.31□□□□□ -0.66e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-222ENST00000604754 3369 ntTSL 1 (best)11.06□□□□□ -0.646e-7■□□□□ 10.1
SMNDC1O75940 STXBP5-202ENST00000367475 521 ntTSL 510.6□□□□□ -0.715e-11■□□□□ 10.1
SMNDC1O75940 HNRNPU-227ENST00000640264 328 ntTSL 310.36□□□□□ -0.756e-7■□□□□ 10.1
SMNDC1O75940 GDA-206ENST00000475764 2019 ntTSL 1 (best)10.35□□□□□ -0.756e-7■□□□□ 10.1
SMNDC1O75940 HNRNPU-211ENST00000489705 451 ntTSL 39.82□□□□□ -0.846e-7■□□□□ 10.1
SMNDC1O75940 ARHGAP4-216ENST00000463905 553 ntTSL 39.7□□□□□ -0.866e-7■□□□□ 10.1
SMNDC1O75940 GDA-205ENST00000436438 990 ntTSL 39.68□□□□□ -0.866e-7■□□□□ 10.1
SMNDC1O75940 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.925e-11■□□□□ 10.1
SMNDC1O75940 USP15-213ENST00000549268 1087 ntTSL 59.1□□□□□ -0.956e-16■□□□□ 10.1
SMNDC1O75940 GDA-208ENST00000489618 888 ntTSL 38.93□□□□□ -0.986e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-203ENST00000425051 594 ntTSL 58.82□□□□□ -16e-7■□□□□ 10.1
SMNDC1O75940 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC8.65□□□□□ -1.025e-11■□□□□ 10.1
SMNDC1O75940 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC8.59□□□□□ -1.035e-11■□□□□ 10.1
SMNDC1O75940 VGLL4-213ENST00000445411 726 ntTSL 58.41□□□□□ -1.066e-7■□□□□ 10.1
SMNDC1O75940 STXBP5-205ENST00000392291 791 ntTSL 58.27□□□□□ -1.095e-11■□□□□ 10.1
SMNDC1O75940 PPP2R5B-204ENST00000528530 407 ntTSL 37.96□□□□□ -1.146e-7■□□□□ 10.1
SMNDC1O75940 ZSWIM8-211ENST00000489234 681 ntTSL 57.92□□□□□ -1.146e-7■□□□□ 10.1
SMNDC1O75940 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.27□□□□□ -1.416e-7■□□□□ 10.1
Retrieved 100 of 11,362 protein–RNA pairs in 164.1 ms