Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDX4O14627 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX4O14627 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.21■□□□□ 0.51
CDX4O14627 NUS1P2-201ENST00000417358 873 ntBASIC18.21■□□□□ 0.51
CDX4O14627 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.21■□□□□ 0.51
CDX4O14627 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.21■□□□□ 0.51
CDX4O14627 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.21■□□□□ 0.51
CDX4O14627 POLD2P1-201ENST00000511220 997 ntBASIC18.21■□□□□ 0.51
CDX4O14627 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.21■□□□□ 0.51
CDX4O14627 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.21■□□□□ 0.51
CDX4O14627 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX4O14627 AL512408.1-201ENST00000569378 2000 ntBASIC18.21■□□□□ 0.51
CDX4O14627 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.21■□□□□ 0.51
CDX4O14627 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CDX4O14627 HOXB1-202ENST00000577092 1414 ntBASIC18.21■□□□□ 0.51
CDX4O14627 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX4O14627 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.21■□□□□ 0.51
CDX4O14627 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX4O14627 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.21■□□□□ 0.51
CDX4O14627 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.21■□□□□ 0.5
CDX4O14627 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.21■□□□□ 0.5
CDX4O14627 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.2■□□□□ 0.5
CDX4O14627 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CDX4O14627 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.2■□□□□ 0.5
CDX4O14627 IGHGP-201ENST00000390555 1178 ntBASIC18.2■□□□□ 0.5
CDX4O14627 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 AC091607.1-201ENST00000490318 1060 ntBASIC18.2■□□□□ 0.5
CDX4O14627 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.2■□□□□ 0.5
CDX4O14627 GUSBP12-201ENST00000513727 720 ntBASIC18.2■□□□□ 0.5
CDX4O14627 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.2■□□□□ 0.5
CDX4O14627 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.2■□□□□ 0.5
CDX4O14627 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.2■□□□□ 0.5
CDX4O14627 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.2■□□□□ 0.5
CDX4O14627 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX4O14627 AC148477.8-201ENST00000624298 468 ntBASIC18.2■□□□□ 0.5
CDX4O14627 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX4O14627 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CDX4O14627 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX4O14627 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CDX4O14627 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 AL109659.2-201ENST00000606809 1674 ntBASIC18.19■□□□□ 0.5
CDX4O14627 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX4O14627 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CDX4O14627 FAM220CP-201ENST00000395253 831 ntBASIC18.19■□□□□ 0.5
CDX4O14627 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.19■□□□□ 0.5
CDX4O14627 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
CDX4O14627 KRT18P67-201ENST00000432816 1264 ntBASIC18.19■□□□□ 0.5
CDX4O14627 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 RNPS1P1-201ENST00000507437 918 ntBASIC18.19■□□□□ 0.5
CDX4O14627 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.19■□□□□ 0.5
CDX4O14627 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.19■□□□□ 0.5
CDX4O14627 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.19■□□□□ 0.5
CDX4O14627 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX4O14627 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX4O14627 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX4O14627 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 AC012676.1-201ENST00000574705 1949 ntBASIC18.18■□□□□ 0.5
CDX4O14627 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX4O14627 AL391422.3-201ENST00000603791 2761 ntBASIC18.18■□□□□ 0.5
CDX4O14627 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 AC009065.1-201ENST00000564055 1225 ntBASIC18.18■□□□□ 0.5
CDX4O14627 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.18■□□□□ 0.5
CDX4O14627 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.18■□□□□ 0.5
CDX4O14627 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CDX4O14627 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.18■□□□□ 0.5
CDX4O14627 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.18■□□□□ 0.5
CDX4O14627 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.18■□□□□ 0.5
CDX4O14627 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CDX4O14627 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX4O14627 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX4O14627 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 PMS2P7-201ENST00000506558 1336 ntBASIC18.18■□□□□ 0.5
CDX4O14627 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.18■□□□□ 0.5
CDX4O14627 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX4O14627 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.18■□□□□ 0.5
CDX4O14627 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX4O14627 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms