Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AL450487.1-201ENST00000426799 995 ntBASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AL135905.2-201ENST00000584934 1404 ntBASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC25.51■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC141586.3-201ENST00000562166 1838 ntBASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC004264.1-201ENST00000608354 794 ntBASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC006333.2-201ENST00000607957 2099 ntBASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 IRX1P1-201ENST00000438849 1838 ntBASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC113347.1-201ENST00000413321 391 ntBASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 KRT16P5-201ENST00000455284 522 ntBASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC133681.1-201ENST00000465482 601 ntBASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC091076.1-201ENST00000610741 619 ntBASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ABBA01031674.1-201ENST00000635145 728 ntBASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms