Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 AC093525.10-201ENST00000625130 1569 ntBASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 AC100803.2-201ENST00000562459 1963 ntBASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
CDC42SE1Q9NRR8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 GCK-209ENST00000616242 2260 ntTSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 USF2-207ENST00000595068 1612 ntTSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 NARF-204ENST00000390006 1766 ntTSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC9.72□□□□□ -0.85
CDC42SE1Q9NRR8 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
CDC42SE1Q9NRR8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms