Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ANO7L1-203ENST00000602586 1720 ntBASIC19.56■□□□□ 0.72
PCDH9Q9HC56 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.56■□□□□ 0.72
PCDH9Q9HC56 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.56■□□□□ 0.72
PCDH9Q9HC56 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 AP002982.1-201ENST00000492365 877 ntBASIC19.56■□□□□ 0.72
PCDH9Q9HC56 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 AL160286.2-201ENST00000567150 934 ntBASIC19.56■□□□□ 0.72
PCDH9Q9HC56 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 HLA-A-209ENST00000638375 975 ntBASIC19.56■□□□□ 0.72
PCDH9Q9HC56 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 AC135050.7-201ENST00000624508 2218 ntBASIC19.55■□□□□ 0.72
PCDH9Q9HC56 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 TSPY23P-201ENST00000440136 739 ntBASIC19.55■□□□□ 0.72
PCDH9Q9HC56 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 AF186192.3-201ENST00000583427 947 ntBASIC19.55■□□□□ 0.72
PCDH9Q9HC56 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 AL353708.3-201ENST00000610272 989 ntBASIC19.55■□□□□ 0.72
PCDH9Q9HC56 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH9Q9HC56 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 AL135905.2-201ENST00000584934 1404 ntBASIC19.54■□□□□ 0.72
PCDH9Q9HC56 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 NIFKP9-201ENST00000419265 221 ntBASIC19.54■□□□□ 0.72
PCDH9Q9HC56 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH9Q9HC56 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDH9Q9HC56 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.53■□□□□ 0.72
PCDH9Q9HC56 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH9Q9HC56 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH9Q9HC56 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
PCDH9Q9HC56 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDH9Q9HC56 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH9Q9HC56 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH9Q9HC56 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms