Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.76■□□□□ 0.27
RFT1Q96AA3 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.76■□□□□ 0.27
RFT1Q96AA3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFT1Q96AA3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RFT1Q96AA3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFT1Q96AA3 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFT1Q96AA3 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
RFT1Q96AA3 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.76■□□□□ 0.27
RFT1Q96AA3 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFT1Q96AA3 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.76■□□□□ 0.27
RFT1Q96AA3 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFT1Q96AA3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
RFT1Q96AA3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.76■□□□□ 0.27
RFT1Q96AA3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RFT1Q96AA3 AC124283.5-201ENST00000624661 1809 ntBASIC16.75■□□□□ 0.27
RFT1Q96AA3 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFT1Q96AA3 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFT1Q96AA3 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFT1Q96AA3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFT1Q96AA3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFT1Q96AA3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFT1Q96AA3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 AL390719.1-204ENST00000412397 1219 ntBASIC16.75■□□□□ 0.27
RFT1Q96AA3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 AC006557.6-201ENST00000623071 864 ntBASIC16.75■□□□□ 0.27
RFT1Q96AA3 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFT1Q96AA3 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFT1Q96AA3 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RFT1Q96AA3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 AC067852.2-201ENST00000590513 2313 ntBASIC16.74■□□□□ 0.27
RFT1Q96AA3 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 MIR935-201ENST00000401179 91 ntBASIC16.74■□□□□ 0.27
RFT1Q96AA3 DUSP5P2-201ENST00000426873 1033 ntBASIC16.74■□□□□ 0.27
RFT1Q96AA3 AC006970.2-201ENST00000450065 779 ntBASIC16.74■□□□□ 0.27
RFT1Q96AA3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFT1Q96AA3 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
RFT1Q96AA3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFT1Q96AA3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFT1Q96AA3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 MIPEPP3-201ENST00000412105 444 ntBASIC16.73■□□□□ 0.27
RFT1Q96AA3 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 NME6-213ENST00000451657 871 ntTSL 2 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 RAP2CP1-201ENST00000605103 478 ntBASIC16.73■□□□□ 0.27
RFT1Q96AA3 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
RFT1Q96AA3 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms