Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LSM3P62310 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LSM3P62310 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LSM3P62310 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
LSM3P62310 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
LSM3P62310 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LSM3P62310 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.08■□□□□ 0.33
LSM3P62310 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
LSM3P62310 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
LSM3P62310 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
LSM3P62310 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LSM3P62310 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.08■□□□□ 0.32
LSM3P62310 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LSM3P62310 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.08■□□□□ 0.32
LSM3P62310 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.08■□□□□ 0.32
LSM3P62310 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
LSM3P62310 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.08■□□□□ 0.32
LSM3P62310 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM3P62310 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
LSM3P62310 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM3P62310 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LSM3P62310 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LSM3P62310 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.07■□□□□ 0.32
LSM3P62310 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
LSM3P62310 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 HLA-G-202ENST00000376815 851 ntBASIC17.07■□□□□ 0.32
LSM3P62310 HLA-G-203ENST00000376818 1127 ntBASIC17.07■□□□□ 0.32
LSM3P62310 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.07■□□□□ 0.32
LSM3P62310 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.07■□□□□ 0.32
LSM3P62310 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LSM3P62310 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM3P62310 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM3P62310 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM3P62310 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LSM3P62310 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 GNAS-203ENST00000306120 1878 ntBASIC17.06■□□□□ 0.32
LSM3P62310 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LSM3P62310 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.06■□□□□ 0.32
LSM3P62310 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.06■□□□□ 0.32
LSM3P62310 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.06■□□□□ 0.32
LSM3P62310 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.06■□□□□ 0.32
LSM3P62310 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
LSM3P62310 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
LSM3P62310 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM3P62310 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms