Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDGFRAP16234 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.88■□□□□ 0.77
PDGFRAP16234 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PDGFRAP16234 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.87■□□□□ 0.77
PDGFRAP16234 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.87■□□□□ 0.77
PDGFRAP16234 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
PDGFRAP16234 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 RBM17P1-201ENST00000453646 1190 ntBASIC19.87■□□□□ 0.77
PDGFRAP16234 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.87■□□□□ 0.77
PDGFRAP16234 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
PDGFRAP16234 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.87■□□□□ 0.77
PDGFRAP16234 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.87■□□□□ 0.77
PDGFRAP16234 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PDGFRAP16234 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PDGFRAP16234 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
PDGFRAP16234 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PDGFRAP16234 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.86■□□□□ 0.77
PDGFRAP16234 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.86■□□□□ 0.77
PDGFRAP16234 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.86■□□□□ 0.77
PDGFRAP16234 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.86■□□□□ 0.77
PDGFRAP16234 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PDGFRAP16234 AC093503.3-201ENST00000624917 2352 ntBASIC19.86■□□□□ 0.77
PDGFRAP16234 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PDGFRAP16234 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
PDGFRAP16234 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PDGFRAP16234 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.85■□□□□ 0.77
PDGFRAP16234 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.85■□□□□ 0.77
PDGFRAP16234 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.85■□□□□ 0.77
PDGFRAP16234 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
PDGFRAP16234 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.85■□□□□ 0.77
PDGFRAP16234 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.85■□□□□ 0.77
PDGFRAP16234 SLC25A1P4-201ENST00000567977 778 ntBASIC19.85■□□□□ 0.77
PDGFRAP16234 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.85■□□□□ 0.77
PDGFRAP16234 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 AP000525.1-201ENST00000608286 694 ntBASIC19.85■□□□□ 0.77
PDGFRAP16234 DGCR10-201ENST00000609839 495 ntBASIC19.85■□□□□ 0.77
PDGFRAP16234 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
PDGFRAP16234 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.85■□□□□ 0.77
PDGFRAP16234 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
PDGFRAP16234 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.85■□□□□ 0.77
PDGFRAP16234 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.84■□□□□ 0.77
PDGFRAP16234 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 UNC93B2-201ENST00000285383 730 ntBASIC19.84■□□□□ 0.77
PDGFRAP16234 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 AC097488.1-201ENST00000507834 756 ntBASIC19.84■□□□□ 0.77
PDGFRAP16234 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.84■□□□□ 0.77
PDGFRAP16234 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.84■□□□□ 0.77
PDGFRAP16234 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.84■□□□□ 0.77
PDGFRAP16234 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.84■□□□□ 0.77
PDGFRAP16234 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PDGFRAP16234 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
PDGFRAP16234 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.84■□□□□ 0.77
PDGFRAP16234 AC079598.2-202ENST00000546624 1451 ntBASIC19.84■□□□□ 0.77
PDGFRAP16234 CROCCP3-202ENST00000420820 1947 ntBASIC19.84■□□□□ 0.77
PDGFRAP16234 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.84■□□□□ 0.77
PDGFRAP16234 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDGFRAP16234 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.83■□□□□ 0.77
PDGFRAP16234 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PDGFRAP16234 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms