Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A2P12110 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
COL6A2P12110 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A2P12110 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL6A2P12110 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A2P12110 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL6A2P12110 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A2P12110 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A2P12110 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL6A2P12110 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A2P12110 HEIH-201ENST00000623091 1652 ntBASIC18.71■□□□□ 0.59
COL6A2P12110 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A2P12110 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A2P12110 MTDHP1-201ENST00000605323 784 ntBASIC18.71■□□□□ 0.59
COL6A2P12110 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A2P12110 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.71■□□□□ 0.59
COL6A2P12110 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A2P12110 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.71■□□□□ 0.59
COL6A2P12110 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.7■□□□□ 0.58
COL6A2P12110 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.7■□□□□ 0.58
COL6A2P12110 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.7■□□□□ 0.58
COL6A2P12110 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL6A2P12110 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.7■□□□□ 0.58
COL6A2P12110 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 KRT17P3-201ENST00000420566 1262 ntBASIC18.7■□□□□ 0.58
COL6A2P12110 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.7■□□□□ 0.58
COL6A2P12110 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.7■□□□□ 0.58
COL6A2P12110 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.7■□□□□ 0.58
COL6A2P12110 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.7■□□□□ 0.58
COL6A2P12110 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A2P12110 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.7■□□□□ 0.58
COL6A2P12110 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.69■□□□□ 0.58
COL6A2P12110 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL6A2P12110 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 RCC2P6-201ENST00000526625 1557 ntBASIC18.69■□□□□ 0.58
COL6A2P12110 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.69■□□□□ 0.58
COL6A2P12110 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.69■□□□□ 0.58
COL6A2P12110 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.69■□□□□ 0.58
COL6A2P12110 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.69■□□□□ 0.58
COL6A2P12110 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 AC007613.1-201ENST00000572811 2597 ntBASIC18.69■□□□□ 0.58
COL6A2P12110 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL6A2P12110 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A2P12110 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.69■□□□□ 0.58
COL6A2P12110 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
COL6A2P12110 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL6A2P12110 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.68■□□□□ 0.58
COL6A2P12110 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A2P12110 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 POU5F1P3-201ENST00000428824 1078 ntBASIC18.68■□□□□ 0.58
COL6A2P12110 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.68■□□□□ 0.58
COL6A2P12110 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A2P12110 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A2P12110 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
COL6A2P12110 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms