Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PDZRN3Q9UPQ7 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 AC141257.4-201ENST00000634557 245 ntBASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 AC136944.6-201ENST00000634818 245 ntBASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 AC092338.2-201ENST00000568827 1415 ntBASIC24.44■■□□□ 1.5
PDZRN3Q9UPQ7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 GOLGA6L3-201ENST00000507199 1679 ntBASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC24.43■■□□□ 1.5
PDZRN3Q9UPQ7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 GXYLT1P6-201ENST00000456472 1187 ntBASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 AC008040.2-201ENST00000461049 708 ntBASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 FAM86EP-206ENST00000510506 987 ntBASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
PDZRN3Q9UPQ7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 PCED1CP-201ENST00000419887 785 ntBASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 AL023803.3-201ENST00000615559 522 ntBASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 HLA-A-209ENST00000638375 975 ntBASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC24.41■■□□□ 1.5
PDZRN3Q9UPQ7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 TPM4P1-201ENST00000436100 807 ntBASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PDZRN3Q9UPQ7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC24.39■■□□□ 1.5
PDZRN3Q9UPQ7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms