Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 ZNF815P-204ENST00000434898 1737 ntBASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 AL512408.1-201ENST00000569378 2000 ntBASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 AC012615.1-201ENST00000565797 1299 ntBASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SLC44A3Q8N4M1 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SLC44A3Q8N4M1 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SLC44A3Q8N4M1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 TOB2P1-201ENST00000469761 992 ntBASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.39■□□□□ 0.69
SLC44A3Q8N4M1 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 AC106795.1-205ENST00000512851 1056 ntBASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 AC073314.1-201ENST00000568729 2216 ntBASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.38■□□□□ 0.69
SLC44A3Q8N4M1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms