Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.38■□□□□ 0.53
FOXA1P55317 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.38■□□□□ 0.53
FOXA1P55317 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.38■□□□□ 0.53
FOXA1P55317 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
FOXA1P55317 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
FOXA1P55317 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.38■□□□□ 0.53
FOXA1P55317 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.38■□□□□ 0.53
FOXA1P55317 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.38■□□□□ 0.53
FOXA1P55317 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.38■□□□□ 0.53
FOXA1P55317 AL023875.1-201ENST00000640777 796 ntBASIC18.38■□□□□ 0.53
FOXA1P55317 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.38■□□□□ 0.53
FOXA1P55317 AC020763.4-201ENST00000623414 4170 ntBASIC18.38■□□□□ 0.53
FOXA1P55317 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
FOXA1P55317 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
FOXA1P55317 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
FOXA1P55317 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.38■□□□□ 0.53
FOXA1P55317 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
FOXA1P55317 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.37■□□□□ 0.53
FOXA1P55317 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
FOXA1P55317 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.37■□□□□ 0.53
FOXA1P55317 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 KRT17P3-201ENST00000420566 1262 ntBASIC18.37■□□□□ 0.53
FOXA1P55317 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.37■□□□□ 0.53
FOXA1P55317 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
FOXA1P55317 AC026366.1-201ENST00000488803 879 ntBASIC18.37■□□□□ 0.53
FOXA1P55317 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.37■□□□□ 0.53
FOXA1P55317 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.37■□□□□ 0.53
FOXA1P55317 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.37■□□□□ 0.53
FOXA1P55317 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.37■□□□□ 0.53
FOXA1P55317 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.37■□□□□ 0.53
FOXA1P55317 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.37■□□□□ 0.53
FOXA1P55317 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA1P55317 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.36■□□□□ 0.53
FOXA1P55317 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.36■□□□□ 0.53
FOXA1P55317 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.36■□□□□ 0.53
FOXA1P55317 Z85996.1-201ENST00000494644 937 ntBASIC18.36■□□□□ 0.53
FOXA1P55317 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.36■□□□□ 0.53
FOXA1P55317 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.36■□□□□ 0.53
FOXA1P55317 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 AC026471.1-201ENST00000564629 3026 ntBASIC18.36■□□□□ 0.53
FOXA1P55317 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
FOXA1P55317 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.36■□□□□ 0.53
FOXA1P55317 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
FOXA1P55317 AC005332.8-201ENST00000622750 2735 ntBASIC18.36■□□□□ 0.53
FOXA1P55317 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA1P55317 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.35■□□□□ 0.53
FOXA1P55317 AC126763.1-201ENST00000552015 2118 ntBASIC18.35■□□□□ 0.53
FOXA1P55317 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 AL354751.1-201ENST00000412768 1863 ntBASIC18.35■□□□□ 0.53
FOXA1P55317 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
FOXA1P55317 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.35■□□□□ 0.53
FOXA1P55317 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXA1P55317 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
FOXA1P55317 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
FOXA1P55317 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
FOXA1P55317 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
FOXA1P55317 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms