Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MSX2P35548 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.1■□□□□ 0.49
MSX2P35548 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MSX2P35548 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.1■□□□□ 0.49
MSX2P35548 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.1■□□□□ 0.49
MSX2P35548 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.1■□□□□ 0.49
MSX2P35548 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
MSX2P35548 CYP2T1P-201ENST00000432607 1285 ntBASIC18.1■□□□□ 0.49
MSX2P35548 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.1■□□□□ 0.49
MSX2P35548 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.1■□□□□ 0.49
MSX2P35548 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
MSX2P35548 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MSX2P35548 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.1■□□□□ 0.49
MSX2P35548 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MSX2P35548 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
MSX2P35548 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.09■□□□□ 0.49
MSX2P35548 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 AC010980.2-201ENST00000587099 1412 ntBASIC18.09■□□□□ 0.49
MSX2P35548 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.09■□□□□ 0.49
MSX2P35548 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
MSX2P35548 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
MSX2P35548 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.09■□□□□ 0.49
MSX2P35548 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.09■□□□□ 0.49
MSX2P35548 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.09■□□□□ 0.49
MSX2P35548 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.09■□□□□ 0.49
MSX2P35548 AC008764.6-201ENST00000595909 2069 ntBASIC18.09■□□□□ 0.49
MSX2P35548 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
MSX2P35548 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
MSX2P35548 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
MSX2P35548 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.09■□□□□ 0.49
MSX2P35548 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.09■□□□□ 0.49
MSX2P35548 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
MSX2P35548 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MSX2P35548 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
MSX2P35548 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
MSX2P35548 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSX2P35548 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSX2P35548 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
MSX2P35548 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.08■□□□□ 0.49
MSX2P35548 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.08■□□□□ 0.49
MSX2P35548 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
MSX2P35548 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.08■□□□□ 0.48
MSX2P35548 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.08■□□□□ 0.48
MSX2P35548 AC069236.1-201ENST00000604339 616 ntBASIC18.08■□□□□ 0.48
MSX2P35548 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
MSX2P35548 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.08■□□□□ 0.48
MSX2P35548 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.08■□□□□ 0.48
MSX2P35548 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
MSX2P35548 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.07■□□□□ 0.48
MSX2P35548 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.07■□□□□ 0.48
MSX2P35548 AC124283.5-201ENST00000624661 1809 ntBASIC18.07■□□□□ 0.48
MSX2P35548 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
MSX2P35548 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.07■□□□□ 0.48
MSX2P35548 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.07■□□□□ 0.48
MSX2P35548 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
MSX2P35548 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.07■□□□□ 0.48
MSX2P35548 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms