Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 AC034232.1-201ENST00000506026 1064 ntBASIC19.57■□□□□ 0.72
TDP1Q9NUW8 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TDP1Q9NUW8 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 RASA4DP-201ENST00000460726 1199 ntBASIC19.56■□□□□ 0.72
TDP1Q9NUW8 MIR3180-5-201ENST00000583743 153 ntBASIC19.56■□□□□ 0.72
TDP1Q9NUW8 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 AC024243.1-201ENST00000609234 778 ntBASIC19.56■□□□□ 0.72
TDP1Q9NUW8 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TDP1Q9NUW8 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 AC069148.1-201ENST00000608741 768 ntBASIC19.55■□□□□ 0.72
TDP1Q9NUW8 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TDP1Q9NUW8 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 PCDHAC2-203ENST00000615316 3011 ntBASIC19.54■□□□□ 0.72
TDP1Q9NUW8 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
TDP1Q9NUW8 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 HBZP1-201ENST00000354915 429 ntBASIC19.53■□□□□ 0.72
TDP1Q9NUW8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TDP1Q9NUW8 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms