Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 LINC01465-201ENST00000408887 1940 ntBASIC15.31■□□□□ 0.04
CX3CL1P78423 SDHAP1-207ENST00000440850 2000 ntBASIC15.31■□□□□ 0.04
CX3CL1P78423 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.31■□□□□ 0.04
CX3CL1P78423 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.31■□□□□ 0.04
CX3CL1P78423 AL353807.1-201ENST00000427475 662 ntBASIC15.31■□□□□ 0.04
CX3CL1P78423 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.31■□□□□ 0.04
CX3CL1P78423 UBE2SP1-201ENST00000450587 669 ntBASIC15.31■□□□□ 0.04
CX3CL1P78423 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC15.31■□□□□ 0.04
CX3CL1P78423 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC15.31■□□□□ 0.04
CX3CL1P78423 RARRES2P10-201ENST00000564312 460 ntBASIC15.31■□□□□ 0.04
CX3CL1P78423 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.31■□□□□ 0.04
CX3CL1P78423 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC15.31■□□□□ 0.04
CX3CL1P78423 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CX3CL1P78423 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC15.31■□□□□ 0.04
CX3CL1P78423 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CX3CL1P78423 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CL1P78423 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CX3CL1P78423 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CX3CL1P78423 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
CX3CL1P78423 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC15.3■□□□□ 0.04
CX3CL1P78423 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CX3CL1P78423 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CX3CL1P78423 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CX3CL1P78423 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 AL160286.2-201ENST00000567150 934 ntBASIC15.3■□□□□ 0.04
CX3CL1P78423 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
CX3CL1P78423 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.3■□□□□ 0.04
CX3CL1P78423 AL353708.3-201ENST00000610272 989 ntBASIC15.3■□□□□ 0.04
CX3CL1P78423 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.3■□□□□ 0.04
CX3CL1P78423 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CX3CL1P78423 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CL1P78423 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CX3CL1P78423 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC15.29■□□□□ 0.04
CX3CL1P78423 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.29■□□□□ 0.04
CX3CL1P78423 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CX3CL1P78423 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 NIFKP9-201ENST00000419265 221 ntBASIC15.29■□□□□ 0.04
CX3CL1P78423 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.29■□□□□ 0.04
CX3CL1P78423 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC15.29■□□□□ 0.04
CX3CL1P78423 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.29■□□□□ 0.04
CX3CL1P78423 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.29■□□□□ 0.04
CX3CL1P78423 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.29■□□□□ 0.04
CX3CL1P78423 AL445675.2-201ENST00000620291 557 ntBASIC15.29■□□□□ 0.04
CX3CL1P78423 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.29■□□□□ 0.04
CX3CL1P78423 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.29■□□□□ 0.04
CX3CL1P78423 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 ADK-206ENST00000541550 2222 ntTSL 2 BASIC15.29■□□□□ 0.04
CX3CL1P78423 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CX3CL1P78423 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CX3CL1P78423 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CX3CL1P78423 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CL1P78423 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms