Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
ATF4P18848 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ATF4P18848 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ATF4P18848 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC15.89■□□□□ 0.13
ATF4P18848 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC15.89■□□□□ 0.13
ATF4P18848 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
ATF4P18848 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.88■□□□□ 0.13
ATF4P18848 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.88■□□□□ 0.13
ATF4P18848 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15.88■□□□□ 0.13
ATF4P18848 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC15.88■□□□□ 0.13
ATF4P18848 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC15.88■□□□□ 0.13
ATF4P18848 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
ATF4P18848 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ATF4P18848 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.88■□□□□ 0.13
ATF4P18848 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
ATF4P18848 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC15.87■□□□□ 0.13
ATF4P18848 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 RNF146-206ENST00000480444 843 ntTSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC15.87■□□□□ 0.13
ATF4P18848 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC15.87■□□□□ 0.13
ATF4P18848 AC012414.1-201ENST00000556676 535 ntBASIC15.87■□□□□ 0.13
ATF4P18848 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 RAB43-208ENST00000615093 783 ntTSL 5 BASIC15.87■□□□□ 0.13
ATF4P18848 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
ATF4P18848 MPST-204ENST00000404393 1329 ntTSL 5 BASIC15.87■□□□□ 0.13
ATF4P18848 AC092850.2-201ENST00000623821 2697 ntBASIC15.87■□□□□ 0.13
ATF4P18848 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ATF4P18848 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
ATF4P18848 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.86■□□□□ 0.13
ATF4P18848 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
ATF4P18848 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
ATF4P18848 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
ATF4P18848 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
ATF4P18848 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
ATF4P18848 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
ATF4P18848 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
ATF4P18848 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
ATF4P18848 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.86■□□□□ 0.13
ATF4P18848 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
ATF4P18848 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC15.86■□□□□ 0.13
ATF4P18848 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
ATF4P18848 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC15.86■□□□□ 0.13
ATF4P18848 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ATF4P18848 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms